1
0
Fork 0

Add exercise 7

master
neingeist 10 years ago
parent 348d6325cb
commit 229023b69c

Binary file not shown.

Binary file not shown.

Binary file not shown.

After

Width:  |  Height:  |  Size: 32 KiB

@ -0,0 +1,40 @@
function centroids = computeCentroids(X, idx, K)
%COMPUTECENTROIDS returs the new centroids by computing the means of the
%data points assigned to each centroid.
% centroids = COMPUTECENTROIDS(X, idx, K) returns the new centroids by
% computing the means of the data points assigned to each centroid. It is
% given a dataset X where each row is a single data point, a vector
% idx of centroid assignments (i.e. each entry in range [1..K]) for each
% example, and K, the number of centroids. You should return a matrix
% centroids, where each row of centroids is the mean of the data points
% assigned to it.
%
% Useful variables
[m n] = size(X);
% You need to return the following variables correctly.
centroids = zeros(K, n);
% ====================== YOUR CODE HERE ======================
% Instructions: Go over every centroid and compute mean of all points that
% belong to it. Concretely, the row vector centroids(i, :)
% should contain the mean of the data points assigned to
% centroid i.
%
% Note: You can use a for-loop over the centroids to compute this.
%
% =============================================================
end

@ -0,0 +1,59 @@
function [h, display_array] = displayData(X, example_width)
%DISPLAYDATA Display 2D data in a nice grid
% [h, display_array] = DISPLAYDATA(X, example_width) displays 2D data
% stored in X in a nice grid. It returns the figure handle h and the
% displayed array if requested.
% Set example_width automatically if not passed in
if ~exist('example_width', 'var') || isempty(example_width)
example_width = round(sqrt(size(X, 2)));
end
% Gray Image
colormap(gray);
% Compute rows, cols
[m n] = size(X);
example_height = (n / example_width);
% Compute number of items to display
display_rows = floor(sqrt(m));
display_cols = ceil(m / display_rows);
% Between images padding
pad = 1;
% Setup blank display
display_array = - ones(pad + display_rows * (example_height + pad), ...
pad + display_cols * (example_width + pad));
% Copy each example into a patch on the display array
curr_ex = 1;
for j = 1:display_rows
for i = 1:display_cols
if curr_ex > m,
break;
end
% Copy the patch
% Get the max value of the patch
max_val = max(abs(X(curr_ex, :)));
display_array(pad + (j - 1) * (example_height + pad) + (1:example_height), ...
pad + (i - 1) * (example_width + pad) + (1:example_width)) = ...
reshape(X(curr_ex, :), example_height, example_width) / max_val;
curr_ex = curr_ex + 1;
end
if curr_ex > m,
break;
end
end
% Display Image
h = imagesc(display_array, [-1 1]);
% Do not show axis
axis image off
drawnow;
end

@ -0,0 +1,8 @@
function drawLine(p1, p2, varargin)
%DRAWLINE Draws a line from point p1 to point p2
% DRAWLINE(p1, p2) Draws a line from point p1 to point p2 and holds the
% current figure
plot([p1(1) p2(1)], [p1(2) p2(2)], varargin{:});
end

@ -0,0 +1,174 @@
%% Machine Learning Online Class
% Exercise 7 | Principle Component Analysis and K-Means Clustering
%
% Instructions
% ------------
%
% This file contains code that helps you get started on the
% exercise. You will need to complete the following functions:
%
% pca.m
% projectData.m
% recoverData.m
% computeCentroids.m
% findClosestCentroids.m
% kMeansInitCentroids.m
%
% For this exercise, you will not need to change any code in this file,
% or any other files other than those mentioned above.
%
%% Initialization
clear ; close all; clc
%% ================= Part 1: Find Closest Centroids ====================
% To help you implement K-Means, we have divided the learning algorithm
% into two functions -- findClosestCentroids and computeCentroids. In this
% part, you shoudl complete the code in the findClosestCentroids function.
%
fprintf('Finding closest centroids.\n\n');
% Load an example dataset that we will be using
load('ex7data2.mat');
% Select an initial set of centroids
K = 3; % 3 Centroids
initial_centroids = [3 3; 6 2; 8 5];
% Find the closest centroids for the examples using the
% initial_centroids
idx = findClosestCentroids(X, initial_centroids);
fprintf('Closest centroids for the first 3 examples: \n')
fprintf(' %d', idx(1:3));
fprintf('\n(the closest centroids should be 1, 3, 2 respectively)\n');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% ===================== Part 2: Compute Means =========================
% After implementing the closest centroids function, you should now
% complete the computeCentroids function.
%
fprintf('\nComputing centroids means.\n\n');
% Compute means based on the closest centroids found in the previous part.
centroids = computeCentroids(X, idx, K);
fprintf('Centroids computed after initial finding of closest centroids: \n')
fprintf(' %f %f \n' , centroids');
fprintf('\n(the centroids should be\n');
fprintf(' [ 2.428301 3.157924 ]\n');
fprintf(' [ 5.813503 2.633656 ]\n');
fprintf(' [ 7.119387 3.616684 ]\n\n');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% =================== Part 3: K-Means Clustering ======================
% After you have completed the two functions computeCentroids and
% findClosestCentroids, you have all the necessary pieces to run the
% kMeans algorithm. In this part, you will run the K-Means algorithm on
% the example dataset we have provided.
%
fprintf('\nRunning K-Means clustering on example dataset.\n\n');
% Load an example dataset
load('ex7data2.mat');
% Settings for running K-Means
K = 3;
max_iters = 10;
% For consistency, here we set centroids to specific values
% but in practice you want to generate them automatically, such as by
% settings them to be random examples (as can be seen in
% kMeansInitCentroids).
initial_centroids = [3 3; 6 2; 8 5];
% Run K-Means algorithm. The 'true' at the end tells our function to plot
% the progress of K-Means
[centroids, idx] = runkMeans(X, initial_centroids, max_iters, true);
fprintf('\nK-Means Done.\n\n');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% ============= Part 4: K-Means Clustering on Pixels ===============
% In this exercise, you will use K-Means to compress an image. To do this,
% you will first run K-Means on the colors of the pixels in the image and
% then you will map each pixel on to it's closest centroid.
%
% You should now complete the code in kMeansInitCentroids.m
%
fprintf('\nRunning K-Means clustering on pixels from an image.\n\n');
% Load an image of a bird
A = double(imread('bird_small.png'));
% If imread does not work for you, you can try instead
% load ('bird_small.mat');
A = A / 255; % Divide by 255 so that all values are in the range 0 - 1
% Size of the image
img_size = size(A);
% Reshape the image into an Nx3 matrix where N = number of pixels.
% Each row will contain the Red, Green and Blue pixel values
% This gives us our dataset matrix X that we will use K-Means on.
X = reshape(A, img_size(1) * img_size(2), 3);
% Run your K-Means algorithm on this data
% You should try different values of K and max_iters here
K = 16;
max_iters = 10;
% When using K-Means, it is important the initialize the centroids
% randomly.
% You should complete the code in kMeansInitCentroids.m before proceeding
initial_centroids = kMeansInitCentroids(X, K);
% Run K-Means
[centroids, idx] = runkMeans(X, initial_centroids, max_iters);
fprintf('Program paused. Press enter to continue.\n');
pause;
%% ================= Part 5: Image Compression ======================
% In this part of the exercise, you will use the clusters of K-Means to
% compress an image. To do this, we first find the closest clusters for
% each example. After that, we
fprintf('\nApplying K-Means to compress an image.\n\n');
% Find closest cluster members
idx = findClosestCentroids(X, centroids);
% Essentially, now we have represented the image X as in terms of the
% indices in idx.
% We can now recover the image from the indices (idx) by mapping each pixel
% (specified by it's index in idx) to the centroid value
X_recovered = centroids(idx,:);
% Reshape the recovered image into proper dimensions
X_recovered = reshape(X_recovered, img_size(1), img_size(2), 3);
% Display the original image
subplot(1, 2, 1);
imagesc(A);
title('Original');
% Display compressed image side by side
subplot(1, 2, 2);
imagesc(X_recovered)
title(sprintf('Compressed, with %d colors.', K));
fprintf('Program paused. Press enter to continue.\n');
pause;

@ -0,0 +1,235 @@
%% Machine Learning Online Class
% Exercise 7 | Principle Component Analysis and K-Means Clustering
%
% Instructions
% ------------
%
% This file contains code that helps you get started on the
% exercise. You will need to complete the following functions:
%
% pca.m
% projectData.m
% recoverData.m
% computeCentroids.m
% findClosestCentroids.m
% kMeansInitCentroids.m
%
% For this exercise, you will not need to change any code in this file,
% or any other files other than those mentioned above.
%
%% Initialization
clear ; close all; clc
%% ================== Part 1: Load Example Dataset ===================
% We start this exercise by using a small dataset that is easily to
% visualize
%
fprintf('Visualizing example dataset for PCA.\n\n');
% The following command loads the dataset. You should now have the
% variable X in your environment
load ('ex7data1.mat');
% Visualize the example dataset
plot(X(:, 1), X(:, 2), 'bo');
axis([0.5 6.5 2 8]); axis square;
fprintf('Program paused. Press enter to continue.\n');
pause;
%% =============== Part 2: Principal Component Analysis ===============
% You should now implement PCA, a dimension reduction technique. You
% should complete the code in pca.m
%
fprintf('\nRunning PCA on example dataset.\n\n');
% Before running PCA, it is important to first normalize X
[X_norm, mu, sigma] = featureNormalize(X);
% Run PCA
[U, S] = pca(X_norm);
% Compute mu, the mean of the each feature
% Draw the eigenvectors centered at mean of data. These lines show the
% directions of maximum variations in the dataset.
hold on;
drawLine(mu, mu + 1.5 * S(1,1) * U(:,1)', '-k', 'LineWidth', 2);
drawLine(mu, mu + 1.5 * S(2,2) * U(:,2)', '-k', 'LineWidth', 2);
hold off;
fprintf('Top eigenvector: \n');
fprintf(' U(:,1) = %f %f \n', U(1,1), U(2,1));
fprintf('\n(you should expect to see -0.707107 -0.707107)\n');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% =================== Part 3: Dimension Reduction ===================
% You should now implement the projection step to map the data onto the
% first k eigenvectors. The code will then plot the data in this reduced
% dimensional space. This will show you what the data looks like when
% using only the corresponding eigenvectors to reconstruct it.
%
% You should complete the code in projectData.m
%
fprintf('\nDimension reduction on example dataset.\n\n');
% Plot the normalized dataset (returned from pca)
plot(X_norm(:, 1), X_norm(:, 2), 'bo');
axis([-4 3 -4 3]); axis square
% Project the data onto K = 1 dimension
K = 1;
Z = projectData(X_norm, U, K);
fprintf('Projection of the first example: %f\n', Z(1));
fprintf('\n(this value should be about 1.481274)\n\n');
X_rec = recoverData(Z, U, K);
fprintf('Approximation of the first example: %f %f\n', X_rec(1, 1), X_rec(1, 2));
fprintf('\n(this value should be about -1.047419 -1.047419)\n\n');
% Draw lines connecting the projected points to the original points
hold on;
plot(X_rec(:, 1), X_rec(:, 2), 'ro');
for i = 1:size(X_norm, 1)
drawLine(X_norm(i,:), X_rec(i,:), '--k', 'LineWidth', 1);
end
hold off
fprintf('Program paused. Press enter to continue.\n');
pause;
%% =============== Part 4: Loading and Visualizing Face Data =============
% We start the exercise by first loading and visualizing the dataset.
% The following code will load the dataset into your environment
%
fprintf('\nLoading face dataset.\n\n');
% Load Face dataset
load ('ex7faces.mat')
% Display the first 100 faces in the dataset
displayData(X(1:100, :));
fprintf('Program paused. Press enter to continue.\n');
pause;
%% =========== Part 5: PCA on Face Data: Eigenfaces ===================
% Run PCA and visualize the eigenvectors which are in this case eigenfaces
% We display the first 36 eigenfaces.
%
fprintf(['\nRunning PCA on face dataset.\n' ...
'(this mght take a minute or two ...)\n\n']);
% Before running PCA, it is important to first normalize X by subtracting
% the mean value from each feature
[X_norm, mu, sigma] = featureNormalize(X);
% Run PCA
[U, S] = pca(X_norm);
% Visualize the top 36 eigenvectors found
displayData(U(:, 1:36)');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% ============= Part 6: Dimension Reduction for Faces =================
% Project images to the eigen space using the top k eigenvectors
% If you are applying a machine learning algorithm
fprintf('\nDimension reduction for face dataset.\n\n');
K = 100;
Z = projectData(X_norm, U, K);
fprintf('The projected data Z has a size of: ')
fprintf('%d ', size(Z));
fprintf('\n\nProgram paused. Press enter to continue.\n');
pause;
%% ==== Part 7: Visualization of Faces after PCA Dimension Reduction ====
% Project images to the eigen space using the top K eigen vectors and
% visualize only using those K dimensions
% Compare to the original input, which is also displayed
fprintf('\nVisualizing the projected (reduced dimension) faces.\n\n');
K = 100;
X_rec = recoverData(Z, U, K);
% Display normalized data
subplot(1, 2, 1);
displayData(X_norm(1:100,:));
title('Original faces');
axis square;
% Display reconstructed data from only k eigenfaces
subplot(1, 2, 2);
displayData(X_rec(1:100,:));
title('Recovered faces');
axis square;
fprintf('Program paused. Press enter to continue.\n');
pause;
%% === Part 8(a): Optional (ungraded) Exercise: PCA for Visualization ===
% One useful application of PCA is to use it to visualize high-dimensional
% data. In the last K-Means exercise you ran K-Means on 3-dimensional
% pixel colors of an image. We first visualize this output in 3D, and then
% apply PCA to obtain a visualization in 2D.
close all; close all; clc
% Re-load the image from the previous exercise and run K-Means on it
% For this to work, you need to complete the K-Means assignment first
A = double(imread('bird_small.png'));
% If imread does not work for you, you can try instead
% load ('bird_small.mat');
A = A / 255;
img_size = size(A);
X = reshape(A, img_size(1) * img_size(2), 3);
K = 16;
max_iters = 10;
initial_centroids = kMeansInitCentroids(X, K);
[centroids, idx] = runkMeans(X, initial_centroids, max_iters);
% Sample 1000 random indexes (since working with all the data is
% too expensive. If you have a fast computer, you may increase this.
sel = floor(rand(1000, 1) * size(X, 1)) + 1;
% Setup Color Palette
palette = hsv(K);
colors = palette(idx(sel), :);
% Visualize the data and centroid memberships in 3D
figure;
scatter3(X(sel, 1), X(sel, 2), X(sel, 3), 10, colors);
title('Pixel dataset plotted in 3D. Color shows centroid memberships');
fprintf('Program paused. Press enter to continue.\n');
pause;
%% === Part 8(b): Optional (ungraded) Exercise: PCA for Visualization ===
% Use PCA to project this cloud to 2D for visualization
% Subtract the mean to use PCA
[X_norm, mu, sigma] = featureNormalize(X);
% PCA and project the data to 2D
[U, S] = pca(X_norm);
Z = projectData(X_norm, U, 2);
% Plot in 2D
figure;
plotDataPoints(Z(sel, :), idx(sel), K);
title('Pixel dataset plotted in 2D, using PCA for dimensionality reduction');
fprintf('Program paused. Press enter to continue.\n');
pause;

Binary file not shown.

Binary file not shown.

Binary file not shown.

@ -0,0 +1,17 @@
function [X_norm, mu, sigma] = featureNormalize(X)
%FEATURENORMALIZE Normalizes the features in X
% FEATURENORMALIZE(X) returns a normalized version of X where
% the mean value of each feature is 0 and the standard deviation
% is 1. This is often a good preprocessing step to do when
% working with learning algorithms.
mu = mean(X);
X_norm = bsxfun(@minus, X, mu);
sigma = std(X_norm);
X_norm = bsxfun(@rdivide, X_norm, sigma);
% ============================================================
end

@ -0,0 +1,33 @@
function idx = findClosestCentroids(X, centroids)
%FINDCLOSESTCENTROIDS computes the centroid memberships for every example
% idx = FINDCLOSESTCENTROIDS (X, centroids) returns the closest centroids
% in idx for a dataset X where each row is a single example. idx = m x 1
% vector of centroid assignments (i.e. each entry in range [1..K])
%
% Set K
K = size(centroids, 1);
% You need to return the following variables correctly.
idx = zeros(size(X,1), 1);
% ====================== YOUR CODE HERE ======================
% Instructions: Go over every example, find its closest centroid, and store
% the index inside idx at the appropriate location.
% Concretely, idx(i) should contain the index of the centroid
% closest to example i. Hence, it should be a value in the
% range 1..K
%
% Note: You can use a for-loop over the examples to compute this.
%
% =============================================================
end

@ -0,0 +1,26 @@
function centroids = kMeansInitCentroids(X, K)
%KMEANSINITCENTROIDS This function initializes K centroids that are to be
%used in K-Means on the dataset X
% centroids = KMEANSINITCENTROIDS(X, K) returns K initial centroids to be
% used with the K-Means on the dataset X
%
% You should return this values correctly
centroids = zeros(K, size(X, 2));
% ====================== YOUR CODE HERE ======================
% Instructions: You should set centroids to randomly chosen examples from
% the dataset X
%
% =============================================================
end

@ -0,0 +1,31 @@
function [U, S] = pca(X)
%PCA Run principal component analysis on the dataset X
% [U, S, X] = pca(X) computes eigenvectors of the covariance matrix of X
% Returns the eigenvectors U, the eigenvalues (on diagonal) in S
%
% Useful values
[m, n] = size(X);
% You need to return the following variables correctly.
U = zeros(n);
S = zeros(n);
% ====================== YOUR CODE HERE ======================
% Instructions: You should first compute the covariance matrix. Then, you
% should use the "svd" function to compute the eigenvectors
% and eigenvalues of the covariance matrix.
%
% Note: When computing the covariance matrix, remember to divide by m (the
% number of examples).
%
% =========================================================================
end

@ -0,0 +1,14 @@
function plotDataPoints(X, idx, K)
%PLOTDATAPOINTS plots data points in X, coloring them so that those with the same
%index assignments in idx have the same color
% PLOTDATAPOINTS(X, idx, K) plots data points in X, coloring them so that those
% with the same index assignments in idx have the same color
% Create palette
palette = hsv(K + 1);
colors = palette(idx, :);
% Plot the data
scatter(X(:,1), X(:,2), 15, colors);
end

@ -0,0 +1,27 @@
function plotProgresskMeans(X, centroids, previous, idx, K, i)
%PLOTPROGRESSKMEANS is a helper function that displays the progress of
%k-Means as it is running. It is intended for use only with 2D data.
% PLOTPROGRESSKMEANS(X, centroids, previous, idx, K, i) plots the data
% points with colors assigned to each centroid. With the previous
% centroids, it also plots a line between the previous locations and
% current locations of the centroids.
%
% Plot the examples
plotDataPoints(X, idx, K);
% Plot the centroids as black x's
plot(centroids(:,1), centroids(:,2), 'x', ...
'MarkerEdgeColor','k', ...
'MarkerSize', 10, 'LineWidth', 3);
% Plot the history of the centroids with lines
for j=1:size(centroids,1)
drawLine(centroids(j, :), previous(j, :));
end
% Title
title(sprintf('Iteration number %d', i))
end

@ -0,0 +1,26 @@
function Z = projectData(X, U, K)
%PROJECTDATA Computes the reduced data representation when projecting only
%on to the top k eigenvectors
% Z = projectData(X, U, K) computes the projection of
% the normalized inputs X into the reduced dimensional space spanned by
% the first K columns of U. It returns the projected examples in Z.
%
% You need to return the following variables correctly.
Z = zeros(size(X, 1), K);
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the projection of the data using only the top K
% eigenvectors in U (first K columns).
% For the i-th example X(i,:), the projection on to the k-th
% eigenvector is given as follows:
% x = X(i, :)';
% projection_k = x' * U(:, k);
%
% =============================================================
end

@ -0,0 +1,28 @@
function X_rec = recoverData(Z, U, K)
%RECOVERDATA Recovers an approximation of the original data when using the
%projected data
% X_rec = RECOVERDATA(Z, U, K) recovers an approximation the
% original data that has been reduced to K dimensions. It returns the
% approximate reconstruction in X_rec.
%
% You need to return the following variables correctly.
X_rec = zeros(size(Z, 1), size(U, 1));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the approximation of the data by projecting back
% onto the original space using the top K eigenvectors in U.
%
% For the i-th example Z(i,:), the (approximate)
% recovered data for dimension j is given as follows:
% v = Z(i, :)';
% recovered_j = v' * U(j, 1:K)';
%
% Notice that U(j, 1:K) is a row vector.
%
% =============================================================
end

@ -0,0 +1,64 @@
function [centroids, idx] = runkMeans(X, initial_centroids, ...
max_iters, plot_progress)
%RUNKMEANS runs the K-Means algorithm on data matrix X, where each row of X
%is a single example
% [centroids, idx] = RUNKMEANS(X, initial_centroids, max_iters, ...
% plot_progress) runs the K-Means algorithm on data matrix X, where each
% row of X is a single example. It uses initial_centroids used as the
% initial centroids. max_iters specifies the total number of interactions
% of K-Means to execute. plot_progress is a true/false flag that
% indicates if the function should also plot its progress as the
% learning happens. This is set to false by default. runkMeans returns
% centroids, a Kxn matrix of the computed centroids and idx, a m x 1
% vector of centroid assignments (i.e. each entry in range [1..K])
%
% Set default value for plot progress
if ~exist('plot_progress', 'var') || isempty(plot_progress)
plot_progress = false;
end
% Plot the data if we are plotting progress
if plot_progress
figure;
hold on;
end
% Initialize values
[m n] = size(X);
K = size(initial_centroids, 1);
centroids = initial_centroids;
previous_centroids = centroids;
idx = zeros(m, 1);
% Run K-Means
for i=1:max_iters
% Output progress
fprintf('K-Means iteration %d/%d...\n', i, max_iters);
if exist('OCTAVE_VERSION')
fflush(stdout);
end
% For each example in X, assign it to the closest centroid
idx = findClosestCentroids(X, centroids);
% Optionally, plot progress here
if plot_progress
plotProgresskMeans(X, centroids, previous_centroids, idx, K, i);
previous_centroids = centroids;
fprintf('Press enter to continue.\n');
pause;
end
% Given the memberships, compute new centroids
centroids = computeCentroids(X, idx, K);
end
% Hold off if we are plotting progress
if plot_progress
hold off;
end
end

@ -0,0 +1,576 @@
function submit(partId, webSubmit)
%SUBMIT Submit your code and output to the ml-class servers
% SUBMIT() will connect to the ml-class server and submit your solution
fprintf('==\n== [ml-class] Submitting Solutions | Programming Exercise %s\n==\n', ...
homework_id());
if ~exist('partId', 'var') || isempty(partId)
partId = promptPart();
end
if ~exist('webSubmit', 'var') || isempty(webSubmit)
webSubmit = 0; % submit directly by default
end
% Check valid partId
partNames = validParts();
if ~isValidPartId(partId)
fprintf('!! Invalid homework part selected.\n');
fprintf('!! Expected an integer from 1 to %d.\n', numel(partNames) + 1);
fprintf('!! Submission Cancelled\n');
return
end
if ~exist('ml_login_data.mat','file')
[login password] = loginPrompt();
save('ml_login_data.mat','login','password');
else
load('ml_login_data.mat');
[login password] = quickLogin(login, password);
save('ml_login_data.mat','login','password');
end
if isempty(login)
fprintf('!! Submission Cancelled\n');
return
end
fprintf('\n== Connecting to ml-class ... ');
if exist('OCTAVE_VERSION')
fflush(stdout);
end
% Setup submit list
if partId == numel(partNames) + 1
submitParts = 1:numel(partNames);
else
submitParts = [partId];
end
for s = 1:numel(submitParts)
thisPartId = submitParts(s);
if (~webSubmit) % submit directly to server
[login, ch, signature, auxstring] = getChallenge(login, thisPartId);
if isempty(login) || isempty(ch) || isempty(signature)
% Some error occured, error string in first return element.
fprintf('\n!! Error: %s\n\n', login);
return
end
% Attempt Submission with Challenge
ch_resp = challengeResponse(login, password, ch);
[result, str] = submitSolution(login, ch_resp, thisPartId, ...
output(thisPartId, auxstring), source(thisPartId), signature);
partName = partNames{thisPartId};
fprintf('\n== [ml-class] Submitted Assignment %s - Part %d - %s\n', ...
homework_id(), thisPartId, partName);
fprintf('== %s\n', strtrim(str));
if exist('OCTAVE_VERSION')
fflush(stdout);
end
else
[result] = submitSolutionWeb(login, thisPartId, output(thisPartId), ...
source(thisPartId));
result = base64encode(result);
fprintf('\nSave as submission file [submit_ex%s_part%d.txt (enter to accept default)]:', ...
homework_id(), thisPartId);
saveAsFile = input('', 's');
if (isempty(saveAsFile))
saveAsFile = sprintf('submit_ex%s_part%d.txt', homework_id(), thisPartId);
end
fid = fopen(saveAsFile, 'w');
if (fid)
fwrite(fid, result);
fclose(fid);
fprintf('\nSaved your solutions to %s.\n\n', saveAsFile);
fprintf(['You can now submit your solutions through the web \n' ...
'form in the programming exercises. Select the corresponding \n' ...
'programming exercise to access the form.\n']);
else
fprintf('Unable to save to %s\n\n', saveAsFile);
fprintf(['You can create a submission file by saving the \n' ...
'following text in a file: (press enter to continue)\n\n']);
pause;
fprintf(result);
end
end
end
end
% ================== CONFIGURABLES FOR EACH HOMEWORK ==================
function id = homework_id()
id = '7';
end
function [partNames] = validParts()
partNames = {
'Find Closest Centroids (k-Means)', ...
'Compute Centroid Means (k-Means)' ...
'PCA', ...
'Project Data (PCA)', ...
'Recover Data (PCA)' ...
};
end
function srcs = sources()
% Separated by part
srcs = { { 'findClosestCentroids.m' }, ...
{ 'computeCentroids.m' }, ...
{ 'pca.m' }, ...
{ 'projectData.m' }, ...
{ 'recoverData.m' } ...
};
end
function out = output(partId, auxstring)
% Random Test Cases
X = reshape(sin(1:165), 15, 11);
Z = reshape(cos(1:121), 11, 11);
C = Z(1:5, :);
idx = (1 + mod(1:15, 3))';
if partId == 1
idx = findClosestCentroids(X, C);
out = sprintf('%0.5f ', idx(:));
elseif partId == 2
centroids = computeCentroids(X, idx, 3);
out = sprintf('%0.5f ', centroids(:));
elseif partId == 3
[U, S] = pca(X);
out = sprintf('%0.5f ', abs([U(:); S(:)]));
elseif partId == 4
X_proj = projectData(X, Z, 5);
out = sprintf('%0.5f ', X_proj(:));
elseif partId == 5
X_rec = recoverData(X(:,1:5), Z, 5);
out = sprintf('%0.5f ', X_rec(:));
end
end
% ====================== SERVER CONFIGURATION ===========================
% ***************** REMOVE -staging WHEN YOU DEPLOY *********************
function url = site_url()
url = 'http://class.coursera.org/ml-007';
end
function url = challenge_url()
url = [site_url() '/assignment/challenge'];
end
function url = submit_url()
url = [site_url() '/assignment/submit'];
end
% ========================= CHALLENGE HELPERS =========================
function src = source(partId)
src = '';
src_files = sources();
if partId <= numel(src_files)
flist = src_files{partId};
for i = 1:numel(flist)
fid = fopen(flist{i});
if (fid == -1)
error('Error opening %s (is it missing?)', flist{i});
end
line = fgets(fid);
while ischar(line)
src = [src line];
line = fgets(fid);
end
fclose(fid);
src = [src '||||||||'];
end
end
end
function ret = isValidPartId(partId)
partNames = validParts();
ret = (~isempty(partId)) && (partId >= 1) && (partId <= numel(partNames) + 1);
end
function partId = promptPart()
fprintf('== Select which part(s) to submit:\n');
partNames = validParts();
srcFiles = sources();
for i = 1:numel(partNames)
fprintf('== %d) %s [', i, partNames{i});
fprintf(' %s ', srcFiles{i}{:});
fprintf(']\n');
end
fprintf('== %d) All of the above \n==\nEnter your choice [1-%d]: ', ...
numel(partNames) + 1, numel(partNames) + 1);
selPart = input('', 's');
partId = str2num(selPart);
if ~isValidPartId(partId)
partId = -1;
end
end
function [email,ch,signature,auxstring] = getChallenge(email, part)
str = urlread(challenge_url(), 'post', {'email_address', email, 'assignment_part_sid', [homework_id() '-' num2str(part)], 'response_encoding', 'delim'});
str = strtrim(str);
r = struct;
while(numel(str) > 0)
[f, str] = strtok (str, '|');
[v, str] = strtok (str, '|');
r = setfield(r, f, v);
end
email = getfield(r, 'email_address');
ch = getfield(r, 'challenge_key');
signature = getfield(r, 'state');
auxstring = getfield(r, 'challenge_aux_data');
end
function [result, str] = submitSolutionWeb(email, part, output, source)
result = ['{"assignment_part_sid":"' base64encode([homework_id() '-' num2str(part)], '') '",' ...
'"email_address":"' base64encode(email, '') '",' ...
'"submission":"' base64encode(output, '') '",' ...
'"submission_aux":"' base64encode(source, '') '"' ...
'}'];
str = 'Web-submission';
end
function [result, str] = submitSolution(email, ch_resp, part, output, ...
source, signature)
params = {'assignment_part_sid', [homework_id() '-' num2str(part)], ...
'email_address', email, ...
'submission', base64encode(output, ''), ...
'submission_aux', base64encode(source, ''), ...
'challenge_response', ch_resp, ...
'state', signature};
str = urlread(submit_url(), 'post', params);
% Parse str to read for success / failure
result = 0;
end
% =========================== LOGIN HELPERS ===========================
function [login password] = loginPrompt()
% Prompt for password
[login password] = basicPrompt();
if isempty(login) || isempty(password)
login = []; password = [];
end
end
function [login password] = basicPrompt()
login = input('Login (Email address): ', 's');
password = input('Password: ', 's');
end
function [login password] = quickLogin(login,password)
disp(['You are currently logged in as ' login '.']);
cont_token = input('Is this you? (y/n - type n to reenter password)','s');
if(isempty(cont_token) || cont_token(1)=='Y'||cont_token(1)=='y')
return;
else
[login password] = loginPrompt();
end
end
function [str] = challengeResponse(email, passwd, challenge)
str = sha1([challenge passwd]);
end
% =============================== SHA-1 ================================
function hash = sha1(str)
% Initialize variables
h0 = uint32(1732584193);
h1 = uint32(4023233417);
h2 = uint32(2562383102);
h3 = uint32(271733878);
h4 = uint32(3285377520);
% Convert to word array
strlen = numel(str);
% Break string into chars and append the bit 1 to the message
mC = [double(str) 128];
mC = [mC zeros(1, 4-mod(numel(mC), 4), 'uint8')];
numB = strlen * 8;
if exist('idivide')
numC = idivide(uint32(numB + 65), 512, 'ceil');
else
numC = ceil(double(numB + 65)/512);
end
numW = numC * 16;
mW = zeros(numW, 1, 'uint32');
idx = 1;
for i = 1:4:strlen + 1
mW(idx) = bitor(bitor(bitor( ...
bitshift(uint32(mC(i)), 24), ...
bitshift(uint32(mC(i+1)), 16)), ...
bitshift(uint32(mC(i+2)), 8)), ...
uint32(mC(i+3)));
idx = idx + 1;
end
% Append length of message
mW(numW - 1) = uint32(bitshift(uint64(numB), -32));
mW(numW) = uint32(bitshift(bitshift(uint64(numB), 32), -32));
% Process the message in successive 512-bit chs
for cId = 1 : double(numC)
cSt = (cId - 1) * 16 + 1;
cEnd = cId * 16;
ch = mW(cSt : cEnd);
% Extend the sixteen 32-bit words into eighty 32-bit words
for j = 17 : 80
ch(j) = ch(j - 3);
ch(j) = bitxor(ch(j), ch(j - 8));
ch(j) = bitxor(ch(j), ch(j - 14));
ch(j) = bitxor(ch(j), ch(j - 16));
ch(j) = bitrotate(ch(j), 1);
end
% Initialize hash value for this ch
a = h0;
b = h1;
c = h2;
d = h3;
e = h4;
% Main loop
for i = 1 : 80
if(i >= 1 && i <= 20)
f = bitor(bitand(b, c), bitand(bitcmp(b), d));
k = uint32(1518500249);
elseif(i >= 21 && i <= 40)
f = bitxor(bitxor(b, c), d);
k = uint32(1859775393);
elseif(i >= 41 && i <= 60)
f = bitor(bitor(bitand(b, c), bitand(b, d)), bitand(c, d));
k = uint32(2400959708);
elseif(i >= 61 && i <= 80)
f = bitxor(bitxor(b, c), d);
k = uint32(3395469782);
end
t = bitrotate(a, 5);
t = bitadd(t, f);
t = bitadd(t, e);
t = bitadd(t, k);
t = bitadd(t, ch(i));
e = d;
d = c;
c = bitrotate(b, 30);
b = a;
a = t;
end
h0 = bitadd(h0, a);
h1 = bitadd(h1, b);
h2 = bitadd(h2, c);
h3 = bitadd(h3, d);
h4 = bitadd(h4, e);
end
hash = reshape(dec2hex(double([h0 h1 h2 h3 h4]), 8)', [1 40]);
hash = lower(hash);
end
function ret = bitadd(iA, iB)
ret = double(iA) + double(iB);
ret = bitset(ret, 33, 0);
ret = uint32(ret);
end
function ret = bitrotate(iA, places)
t = bitshift(iA, places - 32);
ret = bitshift(iA, places);
ret = bitor(ret, t);
end
% =========================== Base64 Encoder ============================
% Thanks to Peter John Acklam
%
function y = base64encode(x, eol)
%BASE64ENCODE Perform base64 encoding on a string.
%
% BASE64ENCODE(STR, EOL) encode the given string STR. EOL is the line ending
% sequence to use; it is optional and defaults to '\n' (ASCII decimal 10).
% The returned encoded string is broken into lines of no more than 76
% characters each, and each line will end with EOL unless it is empty. Let
% EOL be empty if you do not want the encoded string broken into lines.
%
% STR and EOL don't have to be strings (i.e., char arrays). The only
% requirement is that they are vectors containing values in the range 0-255.
%
% This function may be used to encode strings into the Base64 encoding
% specified in RFC 2045 - MIME (Multipurpose Internet Mail Extensions). The
% Base64 encoding is designed to represent arbitrary sequences of octets in a
% form that need not be humanly readable. A 65-character subset
% ([A-Za-z0-9+/=]) of US-ASCII is used, enabling 6 bits to be represented per
% printable character.
%
% Examples
% --------
%
% If you want to encode a large file, you should encode it in chunks that are
% a multiple of 57 bytes. This ensures that the base64 lines line up and
% that you do not end up with padding in the middle. 57 bytes of data fills
% one complete base64 line (76 == 57*4/3):
%
% If ifid and ofid are two file identifiers opened for reading and writing,
% respectively, then you can base64 encode the data with
%
% while ~feof(ifid)
% fwrite(ofid, base64encode(fread(ifid, 60*57)));
% end
%
% or, if you have enough memory,
%
% fwrite(ofid, base64encode(fread(ifid)));
%
% See also BASE64DECODE.
% Author: Peter John Acklam
% Time-stamp: 2004-02-03 21:36:56 +0100
% E-mail: pjacklam@online.no
% URL: http://home.online.no/~pjacklam
if isnumeric(x)
x = num2str(x);
end
% make sure we have the EOL value
if nargin < 2
eol = sprintf('\n');
else
if sum(size(eol) > 1) > 1
error('EOL must be a vector.');
end
if any(eol(:) > 255)
error('EOL can not contain values larger than 255.');
end
end
if sum(size(x) > 1) > 1
error('STR must be a vector.');
end
x = uint8(x);
eol = uint8(eol);
ndbytes = length(x); % number of decoded bytes
nchunks = ceil(ndbytes / 3); % number of chunks/groups
nebytes = 4 * nchunks; % number of encoded bytes
% add padding if necessary, to make the length of x a multiple of 3
if rem(ndbytes, 3)
x(end+1 : 3*nchunks) = 0;
end
x = reshape(x, [3, nchunks]); % reshape the data
y = repmat(uint8(0), 4, nchunks); % for the encoded data
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Split up every 3 bytes into 4 pieces
%
% aaaaaabb bbbbcccc ccdddddd
%
% to form
%
% 00aaaaaa 00bbbbbb 00cccccc 00dddddd
%
y(1,:) = bitshift(x(1,:), -2); % 6 highest bits of x(1,:)
y(2,:) = bitshift(bitand(x(1,:), 3), 4); % 2 lowest bits of x(1,:)
y(2,:) = bitor(y(2,:), bitshift(x(2,:), -4)); % 4 highest bits of x(2,:)
y(3,:) = bitshift(bitand(x(2,:), 15), 2); % 4 lowest bits of x(2,:)
y(3,:) = bitor(y(3,:), bitshift(x(3,:), -6)); % 2 highest bits of x(3,:)
y(4,:) = bitand(x(3,:), 63); % 6 lowest bits of x(3,:)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Now perform the following mapping
%
% 0 - 25 -> A-Z
% 26 - 51 -> a-z
% 52 - 61 -> 0-9
% 62 -> +
% 63 -> /
%
% We could use a mapping vector like
%
% ['A':'Z', 'a':'z', '0':'9', '+/']
%
% but that would require an index vector of class double.
%
z = repmat(uint8(0), size(y));
i = y <= 25; z(i) = 'A' + double(y(i));
i = 26 <= y & y <= 51; z(i) = 'a' - 26 + double(y(i));
i = 52 <= y & y <= 61; z(i) = '0' - 52 + double(y(i));
i = y == 62; z(i) = '+';
i = y == 63; z(i) = '/';
y = z;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Add padding if necessary.
%
npbytes = 3 * nchunks - ndbytes; % number of padding bytes
if npbytes
y(end-npbytes+1 : end) = '='; % '=' is used for padding
end
if isempty(eol)
% reshape to a row vector
y = reshape(y, [1, nebytes]);
else
nlines = ceil(nebytes / 76); % number of lines
neolbytes = length(eol); % number of bytes in eol string
% pad data so it becomes a multiple of 76 elements
y = [y(:) ; zeros(76 * nlines - numel(y), 1)];
y(nebytes + 1 : 76 * nlines) = 0;
y = reshape(y, 76, nlines);
% insert eol strings
eol = eol(:);
y(end + 1 : end + neolbytes, :) = eol(:, ones(1, nlines));
% remove padding, but keep the last eol string
m = nebytes + neolbytes * (nlines - 1);
n = (76+neolbytes)*nlines - neolbytes;
y(m+1 : n) = '';
% extract and reshape to row vector
y = reshape(y, 1, m+neolbytes);
end
% output is a character array
y = char(y);
end

@ -0,0 +1,20 @@
% submitWeb Creates files from your code and output for web submission.
%
% If the submit function does not work for you, use the web-submission mechanism.
% Call this function to produce a file for the part you wish to submit. Then,
% submit the file to the class servers using the "Web Submission" button on the
% Programming Exercises page on the course website.
%
% You should call this function without arguments (submitWeb), to receive
% an interactive prompt for submission; optionally you can call it with the partID
% if you so wish. Make sure your working directory is set to the directory
% containing the submitWeb.m file and your assignment files.
function submitWeb(partId)
if ~exist('partId', 'var') || isempty(partId)
partId = [];
end
submit(partId, 1);
end