model packaging/uploading

models/scripts/zenodo_upload.sh

@@ -0,0 +1,59 @@
+#!/bin/bash
+#
+# Upload big files to Zenodo.
+#
+# usage: ./zenodo_upload.sh [deposition id] [filename] [--verbose|-v]
+#
+# Taken from https://github.com/jhpoelen/zenodo-upload
+# 
+# Copyright (c) 2019 Jorrit Poelen
+# 
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+# 
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+# 
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+#
+
+set -xe
+
+VERBOSE=0
+if [ "$3" == "--verbose" ] || [ "$3" == "-v" ]; then
+    VERBOSE=1
+fi
+
+# strip deposition url prefix if provided; see https://github.com/jhpoelen/zenodo-upload/issues/2#issuecomment-797657717
+DEPOSITION=$( echo $1 | sed 's+^http[s]*://zenodo.org/deposit/++g' )
+FILEPATH="$2"
+FILENAME=$(echo $FILEPATH | sed 's+.*/++g')
+FILENAME=${FILENAME// /%20}
+ZENODO_ENDPOINT=${ZENODO_ENDPOINT:-https://zenodo.org}
+
+BUCKET=$(curl ${ZENODO_ENDPOINT}/api/deposit/depositions/"$DEPOSITION"?access_token="$ZENODO_TOKEN" | jq --raw-output .links.bucket)
+
+if [ "$VERBOSE" -eq 1 ]; then
+    echo "Deposition ID: $DEPOSITION"
+    echo "File path: $FILEPATH"
+    echo "File name: $FILENAME"
+    echo "Bucket URL: $BUCKET"
+    echo "Uploading file..."
+fi
+
+curl --progress-bar \
+    --retry 5 \
+    --retry-delay 5 \
+    -o /dev/null \
+    --upload-file "$FILEPATH" \
+    $BUCKET/"$FILENAME"?access_token="$ZENODO_TOKEN"