utils.find_num_col: clean up and simplify if-else

pull/19/head
Konstantin Baierer 3 years ago
parent 58c5d4dce6
commit 4a903d2ec3

@ -557,57 +557,35 @@ def return_hor_spliter_by_index_for_without_verticals(peaks_neg_fin_t, x_min_hor
def find_num_col(regions_without_seperators, multiplier=3.8):
regions_without_seperators_0 = regions_without_seperators[:, :].sum(axis=0)
##plt.plot(regions_without_seperators_0)
##plt.show()
sigma_ = 35 # 70#35
meda_n_updown = regions_without_seperators_0[len(regions_without_seperators_0) :: -1]
first_nonzero = next((i for i, x in enumerate(regions_without_seperators_0) if x), 0)
last_nonzero = next((i for i, x in enumerate(meda_n_updown) if x), 0)
# print(last_nonzero)
# print(isNaN(last_nonzero))
# last_nonzero=0#halalikh
last_nonzero = len(regions_without_seperators_0) - last_nonzero
y = regions_without_seperators_0 # [first_nonzero:last_nonzero]
y_help = np.zeros(len(y) + 20)
y_help[10 : len(y) + 10] = y
x = np.array(range(len(y)))
zneg_rev = -y_help + np.max(y_help)
zneg = np.zeros(len(zneg_rev) + 20)
zneg[10 : len(zneg_rev) + 10] = zneg_rev
z = gaussian_filter1d(y, sigma_)
zneg = gaussian_filter1d(zneg, sigma_)
peaks_neg, _ = find_peaks(zneg, height=0)
peaks, _ = find_peaks(z, height=0)
peaks_neg = peaks_neg - 10 - 10
last_nonzero = last_nonzero - 100
first_nonzero = first_nonzero + 200
peaks_neg = peaks_neg[(peaks_neg > first_nonzero) & (peaks_neg < last_nonzero)]
peaks = peaks[(peaks > 0.06 * regions_without_seperators.shape[1]) & (peaks < 0.94 * regions_without_seperators.shape[1])]
peaks_neg = peaks_neg[(peaks_neg > 370) & (peaks_neg < (regions_without_seperators.shape[1] - 370))]
# print(peaks)
interest_pos = z[peaks]
interest_pos = interest_pos[interest_pos > 10]
# plt.plot(z)
# plt.show()
interest_neg = z[peaks_neg]
@ -621,9 +599,7 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
min_peaks_neg = 0 # np.min(interest_neg)
# print(np.min(interest_pos),np.max(interest_pos),np.max(interest_pos)/np.min(interest_pos),'minmax')
# $print(min_peaks_pos)
dis_talaei = (min_peaks_pos - min_peaks_neg) / multiplier
# print(interest_pos)
grenze = min_peaks_pos - dis_talaei # np.mean(y[peaks_neg[0]:peaks_neg[len(peaks_neg)-1]])-np.std(y[peaks_neg[0]:peaks_neg[len(peaks_neg)-1]])/2.0
# print(interest_neg,'interest_neg')
@ -650,15 +626,11 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
if (peaks_neg_fin[0] > p_g_u and peaks_neg_fin[1] > p_g_u) or (peaks_neg_fin[0] < p_g_l and peaks_neg_fin[1] < p_g_l) or ((peaks_neg_fin[0] + 200) < p_m and peaks_neg_fin[1] < p_m) or ((peaks_neg_fin[0] - 200) > p_m and peaks_neg_fin[1] > p_m):
num_col = 1
peaks_neg_fin = []
else:
pass
if num_col == 2:
if (peaks_neg_fin[0] > p_g_u) or (peaks_neg_fin[0] < p_g_l):
num_col = 1
peaks_neg_fin = []
else:
pass
##print(len(peaks_neg_fin))
@ -673,7 +645,7 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
for i in range(len(peaks_neg_fin)):
if i == 0:
forest.append(peaks_neg_fin[i])
if i < (len(peaks_neg_fin) - 1):
if i < len(peaks_neg_fin) - 1:
if diff_peaks[i] <= cut_off:
forest.append(peaks_neg_fin[i + 1])
if diff_peaks[i] > cut_off:
@ -687,7 +659,7 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
if not isNaN(forest[np.argmin(z[forest])]):
peaks_neg_true.append(forest[np.argmin(z[forest])])
num_col = (len(peaks_neg_true)) + 1
num_col = len(peaks_neg_true) + 1
p_l = 0
p_u = len(y) - 1
p_m = int(len(y) / 2.0)
@ -706,15 +678,11 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
peaks_neg_true = [peaks_neg_true[0]]
elif (peaks_neg_true[1] < p_g_u and peaks_neg_true[1] > p_g_l) and (peaks_neg_true[0] < p_quarter):
peaks_neg_true = [peaks_neg_true[1]]
else:
pass
if num_col == 2:
if (peaks_neg_true[0] > p_g_u) or (peaks_neg_true[0] < p_g_l):
num_col = 1
peaks_neg_true = []
else:
pass
diff_peaks_annormal = diff_peaks[diff_peaks < 360]
@ -732,9 +700,7 @@ def find_num_col(regions_without_seperators, multiplier=3.8):
else:
peaks_neg_fin_new.append(peaks_neg_fin[ii + 1])
elif (ii - 1) in arg_help_ann:
pass
else:
elif (ii - 1) not in arg_help_ann:
peaks_neg_fin_new.append(peaks_neg_fin[ii])
else:
peaks_neg_fin_new = peaks_neg_fin

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