Merge pull request #9 from qurator-spk/integrating_trocr_and_torch_ensembling_and_updating_characters_list-refactor

Integrating trocr and torch ensembling and updating characters list refactor
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Robert Sachunsky 2026-07-14 16:23:12 +02:00 committed by GitHub
commit 83fca95914
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GPG key ID: B5690EEEBB952194
16 changed files with 479 additions and 98 deletions

2
.gitignore vendored
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@ -12,3 +12,5 @@ output.html
*.sw?
TAGS
uv.lock
/ignore
*.log

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@ -343,7 +343,7 @@ class Eynollah_ocr(Eynollah):
if out_image_with_text:
image_text = Image.new("RGB", (img.shape[1], img.shape[0]), "white")
draw = ImageDraw.Draw(image_text)
font = get_font()
font = get_font(font_size=40)
for indexer_text, bb_ind in enumerate(total_bb_coordinates):
x_bb = bb_ind[0]

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@ -11,6 +11,7 @@ from .train import train_cli
from .convert import convert_cli
from .extract_line_gt import linegt_cli
from .weights_ensembling import ensemble_cli
from .generate_or_update_cnn_rnn_ocr_character_list import main as update_ocr_characters_cli
@click.group('training')
def main():
@ -23,3 +24,4 @@ main.add_command(train_cli, 'train')
main.add_command(convert_cli, 'convert')
main.add_command(linegt_cli, 'export_textline_images_and_text')
main.add_command(ensemble_cli, 'ensembling')
main.add_command(update_ocr_characters_cli, 'generate_or_update_cnn_rnn_ocr_character_list')

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@ -50,6 +50,12 @@ from ..utils import is_image_filename
is_flag=True,
help="if this parameter set to true, cropped textline images will not be masked with textline contour.",
)
@click.option(
"--exclude_vertical_lines",
"-exv",
is_flag=True,
help="if this parameter set to true, vertical textline images will be excluded.",
)
def linegt_cli(
image,
dir_in,
@ -57,6 +63,7 @@ def linegt_cli(
dir_out,
pref_of_dataset,
do_not_mask_with_textline_contour,
exclude_vertical_lines,
):
assert bool(dir_in) ^ bool(image), "Set --dir-in or --image-filename, not both"
if dir_in:
@ -100,6 +107,9 @@ def linegt_cli(
x, y, w, h = cv2.boundingRect(textline_coords)
if exclude_vertical_lines and h > 2 * w:
continue
total_bb_coordinates.append([x, y, w, h])
img_poly_on_img = np.copy(img)

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@ -6,6 +6,7 @@ from pathlib import Path
from PIL import Image, ImageDraw, ImageFont
import cv2
import numpy as np
from eynollah.utils.font import get_font
from .gt_gen_utils import (
filter_contours_area_of_image,
@ -393,11 +394,15 @@ def visualize_reading_order(xml_file, dir_xml, dir_out, dir_imgs):
layout = np.zeros( (y_len,x_len,3) )
layout = cv2.fillPoly(layout, pts =co_text_all, color=(1,1,1))
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
try:
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
overlayed = overlay_layout_on_image(layout, img, cx_ordered, cy_ordered, color, thickness)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), overlayed)
except:
pass
overlayed = overlay_layout_on_image(layout, img, cx_ordered, cy_ordered, color, thickness)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), overlayed)
else:
img = np.zeros( (y_len,x_len,3) )
@ -452,14 +457,17 @@ def visualize_textline_segmentation(xml_file, dir_xml, dir_out, dir_imgs):
xml_file = os.path.join(dir_xml,ind_xml )
f_name = Path(ind_xml).stem
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
try:
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
co_tetxlines, y_len, x_len = get_textline_contours_for_visualization(xml_file)
co_tetxlines, y_len, x_len = get_textline_contours_for_visualization(xml_file)
added_image = visualize_image_from_contours(co_tetxlines, img)
added_image = visualize_image_from_contours(co_tetxlines, img)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), added_image)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), added_image)
except:
pass
@ -509,15 +517,17 @@ def visualize_layout_segmentation(xml_file, dir_xml, dir_out, dir_imgs):
f_name = Path(ind_xml).stem
print(f_name, 'f_name')
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
try:
img_file_name_with_format = find_format_of_given_filename_in_dir(dir_imgs, f_name)
img = cv2.imread(os.path.join(dir_imgs, img_file_name_with_format))
co_text, co_graphic, co_sep, co_img, co_table, co_map, co_noise, y_len, x_len = get_layout_contours_for_visualization(xml_file)
co_text, co_graphic, co_sep, co_img, co_table, co_map, co_music, co_noise, y_len, x_len = get_layout_contours_for_visualization(xml_file)
added_image = visualize_image_from_contours_layout(co_text['paragraph'], co_text['header']+co_text['heading'], co_text['drop-capital'], co_sep, co_img, co_text['marginalia'], co_table, co_map, co_music, img)
added_image = visualize_image_from_contours_layout(co_text['paragraph'], co_text['header']+co_text['heading'], co_text['drop-capital'], co_sep, co_img, co_text['marginalia'], co_table, img)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), added_image)
cv2.imwrite(os.path.join(dir_out, f_name+'.png'), added_image)
except:
pass
@ -552,8 +562,8 @@ def visualize_ocr_text(xml_file, dir_xml, dir_out):
else:
xml_files_ind = [xml_file]
font_path = "Charis-7.000/Charis-Regular.ttf" # Make sure this file exists!
font = ImageFont.truetype(font_path, 40)
###font_path = "Charis-7.000/Charis-Regular.ttf" # Make sure this file exists!
font = get_font(font_size=40)#ImageFont.truetype(font_path, 40)
for ind_xml in tqdm(xml_files_ind):
indexer = 0
@ -590,11 +600,11 @@ def visualize_ocr_text(xml_file, dir_xml, dir_out):
is_vertical = h > 2*w # Check orientation
font = fit_text_single_line(draw, ocr_texts[index], font_path, w, int(h*0.4) )
font = fit_text_single_line(draw, ocr_texts[index], w, int(h*0.4) )
if is_vertical:
vertical_font = fit_text_single_line(draw, ocr_texts[index], font_path, h, int(w * 0.8))
vertical_font = fit_text_single_line(draw, ocr_texts[index], h, int(w * 0.8))
text_img = Image.new("RGBA", (h, w), (255, 255, 255, 0)) # Note: dimensions are swapped
text_draw = ImageDraw.Draw(text_img)

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@ -0,0 +1,59 @@
import os
import numpy as np
import json
import click
import logging
def run_character_list_update(dir_labels, out, current_character_list):
ls_labels = os.listdir(dir_labels)
ls_labels = [ind for ind in ls_labels if ind.endswith('.txt')]
if current_character_list:
with open(current_character_list, 'r') as f_name:
characters = json.load(f_name)
characters = set(characters)
else:
characters = set()
for ind in ls_labels:
label = open(os.path.join(dir_labels,ind),'r').read().split('\n')[0]
for char in label:
characters.add(char)
characters = sorted(list(set(characters)))
with open(out, 'w') as f_name:
json.dump(characters, f_name)
@click.command()
@click.option(
"--dir_labels",
"-dl",
help="directory of labels which are .txt files",
type=click.Path(exists=True, file_okay=False),
required=True,
)
@click.option(
"--current_character_list",
"-ccl",
help="existing character list in a .txt file that needs to be updated with a set of labels",
type=click.Path(exists=True, file_okay=True),
required=False,
)
@click.option(
"--out",
"-o",
help="An output .txt file where the generated or updated character list will be written",
type=click.Path(exists=False, file_okay=True),
)
def main(dir_labels, out, current_character_list):
run_character_list_update(dir_labels, out, current_character_list)

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@ -8,7 +8,7 @@ from shapely import geometry
from pathlib import Path
from PIL import ImageFont
from ocrd_utils import bbox_from_points
from eynollah.utils.font import get_font
KERNEL = np.ones((5, 5), np.uint8)
NS = { 'pc': 'http://schema.primaresearch.org/PAGE/gts/pagecontent/2019-07-15'
@ -18,7 +18,7 @@ with warnings.catch_warnings():
warnings.simplefilter("ignore")
def visualize_image_from_contours_layout(co_par, co_header, co_drop, co_sep, co_image, co_marginal, co_table, co_map, img):
def visualize_image_from_contours_layout(co_par, co_header, co_drop, co_sep, co_image, co_marginal, co_table, co_map, co_music, img):
alpha = 0.5
blank_image = np.ones( (img.shape[:]), dtype=np.uint8) * 255
@ -32,6 +32,7 @@ def visualize_image_from_contours_layout(co_par, co_header, co_drop, co_sep, co_
col_marginal = (106, 90, 205)
col_table = (0, 90, 205)
col_map = (90, 90, 205)
col_music = (90, 90, 0)
if len(co_image)>0:
cv2.drawContours(blank_image, co_image, -1, col_image, thickness=cv2.FILLED) # Fill the contour
@ -60,6 +61,9 @@ def visualize_image_from_contours_layout(co_par, co_header, co_drop, co_sep, co_
if len(co_map)>0:
cv2.drawContours(blank_image, co_map, -1, col_map, thickness=cv2.FILLED) # Fill the contour
if len(co_music)>0:
cv2.drawContours(blank_image, co_music, -1, col_music, thickness=cv2.FILLED) # Fill the contour
img_final =cv2.cvtColor(blank_image, cv2.COLOR_BGR2RGB)
added_image = cv2.addWeighted(img,alpha,img_final,1- alpha,0)
@ -352,11 +356,11 @@ def get_textline_contours_and_ocr_text(xml_file):
ocr_textlines.append(ocr_text_in[0])
return co_use_case, y_len, x_len, ocr_textlines
def fit_text_single_line(draw, text, font_path, max_width, max_height):
def fit_text_single_line(draw, text, max_width, max_height):
initial_font_size = 50
font_size = initial_font_size
while font_size > 10: # Minimum font size
font = ImageFont.truetype(font_path, font_size)
font = get_font(font_size=font_size)# ImageFont.truetype(font_path, font_size)
text_bbox = draw.textbbox((0, 0), text, font=font) # Get text bounding box
text_width = text_bbox[2] - text_bbox[0]
text_height = text_bbox[3] - text_bbox[1]
@ -366,7 +370,7 @@ def fit_text_single_line(draw, text, font_path, max_width, max_height):
font_size -= 2 # Reduce font size and retry
return ImageFont.truetype(font_path, 10) # Smallest font fallback
return get_font(font_size=10)#ImageFont.truetype(font_path, 10) # Smallest font fallback
def get_layout_contours_for_visualization(xml_file):
tree1 = ET.parse(xml_file, parser = ET.XMLParser(encoding='utf-8'))
@ -389,6 +393,7 @@ def get_layout_contours_for_visualization(xml_file):
co_img=[]
co_table=[]
co_map=[]
co_music=[]
co_noise=[]
types_text = []
@ -631,6 +636,31 @@ def get_layout_contours_for_visualization(xml_file):
break
co_map.append(np.array(c_t_in))
if tag.endswith('}MusicRegion') or tag.endswith('}musicregion'):
#print('sth')
for nn in root1.iter(tag):
c_t_in=[]
sumi=0
for vv in nn.iter():
# check the format of coords
if vv.tag==link+'Coords':
coords=bool(vv.attrib)
if coords:
p_h=vv.attrib['points'].split(' ')
c_t_in.append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
break
else:
pass
if vv.tag==link+'Point':
c_t_in.append([ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ])
sumi+=1
#print(vv.tag,'in')
elif vv.tag!=link+'Point' and sumi>=1:
break
co_music.append(np.array(c_t_in))
if tag.endswith('}NoiseRegion') or tag.endswith('}noiseregion'):
#print('sth')
@ -656,7 +686,7 @@ def get_layout_contours_for_visualization(xml_file):
elif vv.tag!=link+'Point' and sumi>=1:
break
co_noise.append(np.array(c_t_in))
return co_text, co_graphic, co_sep, co_img, co_table, co_map, co_noise, y_len, x_len
return co_text, co_graphic, co_sep, co_img, co_table, co_map, co_music, co_noise, y_len, x_len
def get_images_of_ground_truth(
gt_list,
@ -870,7 +900,7 @@ def get_images_of_ground_truth(
types_graphic_label = list(types_graphic_dict.values())
labels_rgb_color = [ (0,0,0), (255,0,0), (255,125,0), (255,0,125), (125,255,125), (125,125,0), (0,125,255), (0,125,0), (125,125,125), (255,0,255), (125,0,125), (0,255,0),(0,0,255), (0,255,255), (255,125,125), (0,125,125), (0,255,125), (255,125,255), (125,255,0), (125,255,255)]
labels_rgb_color = [ (0,0,0), (255,0,0), (255,125,0), (255,0,125), (125,255,125), (125,125,0), (0,125,255), (0,125,0), (125,125,125), (255,0,255), (125,0,125), (0,255,0),(0,0,255), (0,255,255), (255,125,125), (0,125,125), (0,255,125), (255,125,255), (125,255,0), (125,255,255), (125,125,255)]
region_tags=np.unique([x for x in alltags if x.endswith('Region')])
@ -882,6 +912,7 @@ def get_images_of_ground_truth(
co_img=[]
co_table=[]
co_map=[]
co_music=[]
co_noise=[]
for tag in region_tags:
@ -966,20 +997,22 @@ def get_images_of_ground_truth(
if "rest_as_decoration" in types_graphic:
types_graphic_without_decoration = [element for element in types_graphic if element!='rest_as_decoration' and element!='decoration']
if len(types_graphic_without_decoration) == 0:
if "type" in nn.attrib:
c_t_in_graphic['decoration'].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
#if "type" in nn.attrib:
c_t_in_graphic['decoration'].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
elif len(types_graphic_without_decoration) >= 1:
if "type" in nn.attrib:
if nn.attrib['type'] in types_graphic_without_decoration:
c_t_in_graphic[nn.attrib['type']].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
else:
c_t_in_graphic['decoration'].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
else:
c_t_in_graphic['decoration'].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
else:
if "type" in nn.attrib:
if nn.attrib['type'] in all_defined_graphic_types:
c_t_in_graphic[nn.attrib['type']].append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
break
else:
pass
@ -989,9 +1022,9 @@ def get_images_of_ground_truth(
if "rest_as_decoration" in types_graphic:
types_graphic_without_decoration = [element for element in types_graphic if element!='rest_as_decoration' and element!='decoration']
if len(types_graphic_without_decoration) == 0:
if "type" in nn.attrib:
c_t_in_graphic['decoration'].append( [ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ] )
sumi+=1
#if "type" in nn.attrib:
c_t_in_graphic['decoration'].append( [ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ] )
sumi+=1
elif len(types_graphic_without_decoration) >= 1:
if "type" in nn.attrib:
if nn.attrib['type'] in types_graphic_without_decoration:
@ -1000,6 +1033,9 @@ def get_images_of_ground_truth(
else:
c_t_in_graphic['decoration'].append( [ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ] )
sumi+=1
else:
c_t_in_graphic['decoration'].append( [ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ] )
sumi+=1
else:
if "type" in nn.attrib:
@ -1119,6 +1155,32 @@ def get_images_of_ground_truth(
break
co_map.append(np.array(c_t_in))
if 'musicregion' in keys:
if tag.endswith('}MusicRegion') or tag.endswith('}musicregion'):
#print('sth')
for nn in root1.iter(tag):
c_t_in=[]
sumi=0
for vv in nn.iter():
# check the format of coords
if vv.tag==link+'Coords':
coords=bool(vv.attrib)
if coords:
p_h=vv.attrib['points'].split(' ')
c_t_in.append( np.array( [ [ int(x.split(',')[0]) , int(x.split(',')[1]) ] for x in p_h] ) )
break
else:
pass
if vv.tag==link+'Point':
c_t_in.append([ int(float(vv.attrib['x'])) , int(float(vv.attrib['y'])) ])
sumi+=1
#print(vv.tag,'in')
elif vv.tag!=link+'Point' and sumi>=1:
break
co_music.append(np.array(c_t_in))
if 'noiseregion' in keys:
if tag.endswith('}NoiseRegion') or tag.endswith('}noiseregion'):
#print('sth')
@ -1195,6 +1257,10 @@ def get_images_of_ground_truth(
erosion_rate = 0#2
dilation_rate = 3#4
co_map, img_boundary = update_region_contours(co_map, img_boundary, erosion_rate, dilation_rate, y_len, x_len )
if "musicregion" in elements_with_artificial_class:
erosion_rate = 0#2
dilation_rate = 3#4
co_music, img_boundary = update_region_contours(co_music, img_boundary, erosion_rate, dilation_rate, y_len, x_len )
@ -1222,6 +1288,8 @@ def get_images_of_ground_truth(
img_poly=cv2.fillPoly(img, pts =co_table, color=labels_rgb_color[ config_params['tableregion']])
if 'mapregion' in keys:
img_poly=cv2.fillPoly(img, pts =co_map, color=labels_rgb_color[ config_params['mapregion']])
if 'musicregion' in keys:
img_poly=cv2.fillPoly(img, pts =co_music, color=labels_rgb_color[ config_params['musicregion']])
if 'noiseregion' in keys:
img_poly=cv2.fillPoly(img, pts =co_noise, color=labels_rgb_color[ config_params['noiseregion']])
@ -1286,6 +1354,9 @@ def get_images_of_ground_truth(
if 'mapregion' in keys:
color_label = config_params['mapregion']
img_poly=cv2.fillPoly(img, pts =co_map, color=(color_label,color_label,color_label))
if 'musicregion' in keys:
color_label = config_params['musicregion']
img_poly=cv2.fillPoly(img, pts =co_music, color=(color_label,color_label,color_label))
if 'noiseregion' in keys:
color_label = config_params['noiseregion']
img_poly=cv2.fillPoly(img, pts =co_noise, color=(color_label,color_label,color_label))

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@ -132,15 +132,31 @@ class SBBPredict:
self.model = Model(
self.model.get_layer(name = "image").input,
self.model.get_layer(name = "dense2").output)
assert isinstance(self.model, Model)
elif self.task == "transformer-ocr":
import torch
from transformers import VisionEncoderDecoderModel, TrOCRProcessor
self.model = VisionEncoderDecoderModel.from_pretrained(self.model_dir)
self.processor = TrOCRProcessor.from_pretrained(self.model_dir)
if self.cpu:
self.device = torch.device('cpu')
else:
self.device = torch.device('cuda:0')
self.model.to(self.device)
assert isinstance(self.model, torch.nn.Module)
else:
self.model = load_model(self.model_dir, compile=False,
custom_objects={"PatchEncoder": PatchEncoder,
"Patches": Patches})
assert isinstance(self.model, Model)
##if self.weights_dir!=None:
##self.model.load_weights(self.weights_dir)
assert isinstance(self.model, Model)
if self.task != 'classification' and self.task != 'reading_order':
last = self.model.layers[-1]
self.img_height = last.output_shape[1]
@ -231,6 +247,13 @@ class SBBPredict:
pred_texts = pred_texts[0].replace("[UNK]", "")
return pred_texts
elif self.task == "transformer-ocr":
from PIL import Image
image = Image.open(image_dir).convert("RGB")
pixel_values = self.processor(image, return_tensors="pt").pixel_values
generated_ids = self.model.generate(pixel_values.to(self.device))
return self.processor.batch_decode(generated_ids, skip_special_tokens=True)[0]
elif self.task == 'reading_order':
img_height = self.config_params_model['input_height']
@ -566,6 +589,8 @@ class SBBPredict:
cv2.imwrite(self.save,res)
elif self.task == "cnn-rnn-ocr":
print(f"Detected text: {res}")
elif self.task == "transformer-ocr":
print(f"Detected text: {res}")
else:
img_seg_overlayed, only_layout = self.visualize_model_output(res, self.img_org, self.task)
if self.save:
@ -672,7 +697,7 @@ def main(image, dir_in, model, patches, save, save_layout, ground_truth, xml_fil
with open(os.path.join(model,'config.json')) as f:
config_params_model = json.load(f)
task = config_params_model['task']
if task not in ['classification', 'reading_order', "cnn-rnn-ocr"]:
if task not in ['classification', 'reading_order', "cnn-rnn-ocr", "transformer-ocr"]:
assert not image or save, "For segmentation or binarization, an input single image -i also requires an output filename -s"
assert not dir_in or out, "For segmentation or binarization, an input directory -di also requires an output directory -o"
x = SBBPredict(image, dir_in, model, task, config_params_model,

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@ -3,6 +3,7 @@ import sys
import io
import json
import click
from typing import Optional
from tqdm import tqdm
import requests
@ -397,7 +398,7 @@ def run(_config,
f1_threshold_classification=None,
classification_classes_name=None,
## if task=cnn-rnn-ocr
characters_txt_file=None,
characters_txt_file: Optional[str]=None,
color_padding_rotation=False,
thetha_padd=None,
bin_deg=False,
@ -698,6 +699,79 @@ def run(_config,
callbacks=callbacks,
initial_epoch=index_start)
elif task=="transformer-ocr":
import torch
from torch.utils.data import Dataset as TorchDataset
from transformers import TrOCRProcessor, VisionEncoderDecoderModel, Seq2SeqTrainer, Seq2SeqTrainingArguments, default_data_collator
dir_img, dir_lab = get_dirs_or_files(dir_train)
if continue_training:
model = VisionEncoderDecoderModel.from_pretrained(dir_of_start_model)
else:
model = VisionEncoderDecoderModel.from_pretrained("microsoft/trocr-base-printed")
processor = TrOCRProcessor.from_pretrained("microsoft/trocr-base-printed")
# Create a DataLoader
class TransformerOCRTorchDataset(TorchDataset):
"""
Wraps preprocess_imgs in a format consumable by torch
"""
def __init__(self, config, dir_img, dir_lab):
self.samples = preprocess_imgs(
config,
dir_img,
dir_lab,
processor=processor,
)
def __len__(self):
return len(self.samples)
def __iter__(self):
yield from self.samples
dataset = TransformerOCRTorchDataset(_config, dir_img, dir_lab)
data_loader = torch.utils.data.DataLoader(dataset, batch_size=1)
train_dataset = data_loader.dataset
# set special tokens used for creating the decoder_input_ids from the labels
model.config.decoder_start_token_id = processor.tokenizer.cls_token_id
model.config.pad_token_id = processor.tokenizer.pad_token_id
# make sure vocab size is set correctly
model.config.vocab_size = model.config.decoder.vocab_size
# set beam search parameters
model.config.eos_token_id = processor.tokenizer.sep_token_id
model.config.max_length = max_len
model.config.early_stopping = True
model.config.no_repeat_ngram_size = 3
model.config.length_penalty = 2.0
model.config.num_beams = 4
training_args = Seq2SeqTrainingArguments(
predict_with_generate=True,
num_train_epochs=n_epochs,
learning_rate=learning_rate,
per_device_train_batch_size=n_batch,
fp16=True,
output_dir=dir_output,
logging_steps=2,
save_steps=save_interval,
)
# instantiate trainer
trainer = Seq2SeqTrainer(
model=model,
tokenizer=processor.feature_extractor,
args=training_args,
train_dataset=train_dataset,
data_collator=default_data_collator,
)
trainer.train()
elif task=='classification':
if continue_training:
model = load_model(dir_of_start_model, compile=False)
@ -741,7 +815,7 @@ def run(_config,
usable_checkpoints = [os.path.join(dir_output, 'model_{epoch:02d}'.format(epoch=epoch + 1))
for epoch in usable_checkpoints]
ens_path = os.path.join(dir_output, 'model_ens_avg')
run_ensembling(usable_checkpoints, ens_path)
run_ensembling(usable_checkpoints, ens_path, framework='tensorflow')
_log.info("ensemble model saved under '%s'", ens_path)
elif task=='reading_order':

View file

@ -789,7 +789,7 @@ def preprocess_imgs(config,
lab = cv2.imread(os.path.join(dir_lab, img_name + '.png'))
elif config['task'] == "enhancement":
lab = cv2.imread(os.path.join(dir_lab, img))
elif config['task'] == "cnn-rnn-ocr":
elif config['task'] in ["cnn-rnn-ocr", "transformer-ocr"]:
# assert lab == 'img_name + '.txt'
with open(os.path.join(dir_lab, img_name + '.txt'), 'r') as f:
lab = f.read().split('\n')[0]
@ -797,7 +797,7 @@ def preprocess_imgs(config,
lab = None
try:
if config['task'] == "cnn-rnn-ocr":
if config['task'] in ["cnn-rnn-ocr", "transformer-ocr"]:
yield from preprocess_img_ocr(img, img_name, lab, **config)
continue
else:
@ -1116,14 +1116,25 @@ def preprocess_img_ocr(
number_of_backgrounds_per_image=None,
list_all_possible_background_images=None,
list_all_possible_foreground_rgbs=None,
task=None,
processor=None,
**kwargs
):
def scale_image(img):
return scale_padd_image_for_ocr(img, input_height, input_width).astype(np.float32) / 255.
#lab = vectorize_label(lab, char_to_num, padding_token, max_len)
# now padded at Dataset.padded_batch
lab = char_to_num(tf.strings.unicode_split(lab, input_encoding="UTF-8"))
yield scale_image(img), lab
if task == 'cnn-rnn-ocr':
assert char_to_num, 'task is cnn-rnn-ocr, so preprocess_imgs_ocr should be passed "char_to_num"'
lab = char_to_num(tf.strings.unicode_split(lab, input_encoding="UTF-8"))
yield_encoder = lambda x: x
elif task == 'transformer-ocr':
assert processor, 'task is transformer-ocr, so preprocess_imgs_ocr should be passed "processor"'
# TODO make max_length configurable again, if deemed sensible
lab = [l if l != self.processor.tokenizer.pad_token_id else -100
for l in processor.tokenizer(lab, padding="max_length", max_length=128).input_ids]
yield_encoder = lambda img_, lab_: {"pixel_values": processor(Image.fromarray(img_), return_tensors="pt").pixel_values.squeeze(), "labels": torch.tensor(lab_)}
yield yield_encoder(scale_image(img), lab)
#to_yield = {"image": ret_x, "label": ret_y}
if dir_img_bin:
@ -1139,32 +1150,32 @@ def preprocess_img_ocr(
for padd_col in padd_colors:
img_pad = do_padding_for_ocr(img, 1.2, padd_col)
img_rot = rotation_not_90_func_single_image(img_pad, thetha_ind)
yield scale_image(img_rot), lab
yield yield_encoder(scale_image(img_rot), lab)
if rotation_not_90:
for thetha_ind in thetha:
img_rot = rotation_not_90_func_single_image(img, thetha_ind)
yield scale_image(img_rot), lab
yield yield_encoder(scale_image(img_rot), lab)
if blur_aug:
for blur_type in blur_k:
img_blur = bluring(img, blur_type)
yield scale_image(img_blur), lab
yield yield_encoder(scale_image(img_blur), lab)
if degrading:
for deg_scale_ind in degrade_scales:
img_deg = do_degrading(img, deg_scale_ind)
yield scale_image(img_deg), lab
yield yield_encoder(scale_image(img_deg), lab)
if bin_deg:
for deg_scale_ind in degrade_scales:
img_deg = do_degrading(img_bin_corr, deg_scale_ind)
yield scale_image(img_deg), lab
yield yield_encoder(scale_image(img_deg), lab)
if brightening:
for bright_scale_ind in brightness:
img_bright = do_brightening(img, bright_scale_ind)
yield scale_image(img_bright), lab
yield yield_encoder(scale_image(img_bright), lab)
if padding_white:
for padding_size in white_padds:
for padd_col in padd_colors:
img_pad = do_padding_for_ocr(img, padding_size, padd_col)
yield scale_image(img_pad), lab
yield yield_encoder(scale_image(img_pad), lab)
if adding_rgb_foreground:
for i_n in range(number_of_backgrounds_per_image):
background_image_chosen_name = random.choice(list_all_possible_background_images)
@ -1178,7 +1189,7 @@ def preprocess_img_ocr(
img_fg = \
return_binary_image_with_given_rgb_background_and_given_foreground_rgb(
img_bin_corr, img_rgb_background_chosen, foreground_rgb_chosen)
yield scale_image(img_fg), lab
yield yield_encoder(scale_image(img_fg), lab)
if adding_rgb_background:
for i_n in range(number_of_backgrounds_per_image):
background_image_chosen_name = random.choice(list_all_possible_background_images)
@ -1186,59 +1197,59 @@ def preprocess_img_ocr(
cv2.imread(dir_rgb_backgrounds + '/' + background_image_chosen_name)
img_bg = \
return_binary_image_with_given_rgb_background(img_bin_corr, img_rgb_background_chosen)
yield scale_image(img_bg), lab
yield yield_encoder(scale_image(img_bg), lab)
if binarization:
yield scale_image(img_bin_corr), lab
yield yield_encoder(scale_image(img_bin_corr), lab)
if image_inversion:
img_inv = invert_image(img_bin_corr)
yield scale_image(img_inv), lab
yield yield_encoder(scale_image(img_inv), lab)
if channels_shuffling:
for shuffle_index in shuffle_indexes:
img_shuf = return_shuffled_channels(img, shuffle_index)
yield scale_image(img_shuf), lab
yield yield_encoder(scale_image(img_shuf), lab)
if add_red_textlines:
img_red = return_image_with_red_elements(img, img_bin_corr)
yield scale_image(img_red), lab
yield yield_encoder(scale_image(img_red), lab)
if white_noise_strap:
img_noisy = return_image_with_strapped_white_noises(img)
yield scale_image(img_noisy), lab
yield yield_encoder(scale_image(img_noisy), lab)
if textline_skewing:
for des_scale_ind in skewing_amplitudes:
img_rot = do_deskewing(img, des_scale_ind)
yield scale_image(img_rot), lab
yield yield_encoder(scale_image(img_rot), lab)
if textline_skewing_bin:
for des_scale_ind in skewing_amplitudes:
img_rot = do_deskewing(img_bin_corr, des_scale_ind)
yield scale_image(img_rot), lab
yield yield_encoder(scale_image(img_rot), lab)
if textline_left_in_depth:
img_warp = do_direction_in_depth(img, 'left')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_left_in_depth_bin:
img_warp = do_direction_in_depth(img_bin_corr, 'left')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_right_in_depth:
img_warp = do_direction_in_depth(img, 'right')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_right_in_depth_bin:
img_warp = do_direction_in_depth(img_bin_corr, 'right')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_up_in_depth:
img_warp = do_direction_in_depth(img, 'up')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_up_in_depth_bin:
img_warp = do_direction_in_depth(img_bin_corr, 'up')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_down_in_depth:
img_warp = do_direction_in_depth(img, 'down')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if textline_down_in_depth_bin:
img_warp = do_direction_in_depth(img_bin_corr, 'down')
yield scale_image(img_warp), lab
yield yield_encoder(scale_image(img_warp), lab)
if pepper_aug:
for pepper_ind in pepper_indexes:
img_noisy = add_salt_and_pepper_noise(img, pepper_ind, pepper_ind)
yield scale_image(img_noisy), lab
yield yield_encoder(scale_image(img_noisy), lab)
if pepper_bin_aug:
for pepper_ind in pepper_indexes:
img_noisy = add_salt_and_pepper_noise(img_bin_corr, pepper_ind, pepper_ind)
yield scale_image(img_noisy), lab
yield yield_encoder(scale_image(img_noisy), lab)

View file

@ -1,4 +1,5 @@
import os
from typing import Optional
from warnings import catch_warnings, simplefilter
import click
@ -11,33 +12,56 @@ from ocrd_utils import tf_disable_interactive_logs
tf_disable_interactive_logs()
import tensorflow as tf
from tensorflow.keras.models import load_model
import torch
from transformers import VisionEncoderDecoderModel
from ..patch_encoder import (
PatchEncoder,
Patches,
)
def run_ensembling(model_dirs, out_dir):
all_weights = []
def run_ensembling(dir_models, out, framework):
ls_models = os.listdir(dir_models)
# model: Optional[VisionEncoderDecoderModel] = None
# model_name: Optional[str] = None
if framework=="torch":
models = []
sd_models = []
for model_dir in model_dirs:
assert os.path.isdir(model_dir), model_dir
model = load_model(model_dir, compile=False,
custom_objects=dict(PatchEncoder=PatchEncoder,
Patches=Patches))
all_weights.append(model.get_weights())
for model_name in ls_models:
model = VisionEncoderDecoderModel.from_pretrained(os.path.join(dir_models, model_name))
models.append(model)
sd_models.append(model.state_dict())
for key in sd_models[0]:
sd_models[0][key] = sum(sd[key] for sd in sd_models) / len(sd_models)
new_weights = []
for layer_weights in zip(*all_weights):
layer_weights = np.array([np.array(weights).mean(axis=0)
for weights in zip(*layer_weights)])
new_weights.append(layer_weights)
model.load_state_dict(sd_models[0])
os.system("mkdir "+out)
torch.save(model.state_dict(), os.path.join(out, "pytorch_model.bin"))
os.system('cp ' + os.path.join(os.path.join(dir_models, model_name), "config.json") + " " + out)
#model = tf.keras.models.clone_model(model)
model.set_weights(new_weights)
else:
weights=[]
model.save(out_dir)
os.system('cp ' + os.path.join(model_dirs[0], "config.json ") + out_dir + "/")
for model_name in ls_models:
model = load_model(os.path.join(dir_models, model_name), compile=False, custom_objects={'PatchEncoder':PatchEncoder, 'Patches': Patches})
weights.append(model.get_weights())
new_weights = list()
for weights_list_tuple in zip(*weights):
new_weights.append(
[np.array(weights_).mean(axis=0)\
for weights_ in zip(*weights_list_tuple)])
new_weights = [np.array(x) for x in new_weights]
model.set_weights(new_weights)
model.save(out)
os.system('cp '+os.path.join(os.path.join(dir_models, model_name), "config.json") + " " + out)
os.system('cp '+os.path.join(os.path.join(dir_models, model_name), "characters_org.txt") + " " + out)
@click.command()
@click.option(
@ -56,12 +80,19 @@ def run_ensembling(model_dirs, out_dir):
required=True,
type=click.Path(exists=False, file_okay=False),
)
def ensemble_cli(in_, out):
@click.option(
"--framework",
"-fw",
help="this parameter gets tensorflow or torch as model framework",
type=click.Choice(['torch', 'tensorflow']),
default="tensorflow"
)
def ensemble_cli(in_, out, framework):
"""
mix multiple model weights
Load a sequence of models and mix them into a single ensemble model
by averaging their weights. Write the resulting model.
"""
run_ensembling(in_, out)
run_ensembling(in_, out, framework)

View file

@ -9,8 +9,8 @@ else:
import importlib.resources as importlib_resources
def get_font():
def get_font(font_size):
#font_path = "Charis-7.000/Charis-Regular.ttf" # Make sure this file exists!
font = importlib_resources.files(__package__) / "../Charis-Regular.ttf"
font = importlib_resources.files(__package__) / "../Amiri-Regular.ttf"
with importlib_resources.as_file(font) as font:
return ImageFont.truetype(font=font, size=40)
return ImageFont.truetype(font=font, size=font_size)

View file

@ -0,0 +1,82 @@
{
"backbone_type" : "transformer",
"task": "transformer-ocr",
"n_classes" : 2,
"max_len": 192,
"n_epochs" : 1,
"input_height" : 32,
"input_width" : 512,
"weight_decay" : 1e-6,
"n_batch" : 1,
"learning_rate": 1e-5,
"save_interval": 1500,
"patches" : false,
"pretraining" : false,
"augmentation" : true,
"flip_aug" : false,
"blur_aug" : true,
"scaling" : false,
"adding_rgb_background": true,
"adding_rgb_foreground": true,
"add_red_textlines": true,
"white_noise_strap": true,
"textline_right_in_depth": true,
"textline_left_in_depth": true,
"textline_up_in_depth": true,
"textline_down_in_depth": true,
"textline_right_in_depth_bin": true,
"textline_left_in_depth_bin": true,
"textline_up_in_depth_bin": true,
"textline_down_in_depth_bin": true,
"bin_deg": true,
"textline_skewing": true,
"textline_skewing_bin": true,
"channels_shuffling": true,
"degrading": true,
"brightening": true,
"binarization" : true,
"pepper_aug": true,
"pepper_bin_aug": true,
"image_inversion": true,
"scaling_bluring" : false,
"scaling_binarization" : false,
"scaling_flip" : false,
"rotation": false,
"color_padding_rotation": true,
"padding_white": true,
"rotation_not_90": true,
"transformer_num_patches_xy": [56, 56],
"transformer_patchsize_x": 4,
"transformer_patchsize_y": 4,
"transformer_projection_dim": 64,
"transformer_mlp_head_units": [128, 64],
"transformer_layers": 1,
"transformer_num_heads": 1,
"transformer_cnn_first": false,
"blur_k" : ["blur","gauss","median"],
"padd_colors" : ["white", "black"],
"scales" : [0.6, 0.7, 0.8, 0.9],
"brightness" : [1.3, 1.5, 1.7, 2],
"degrade_scales" : [0.2, 0.4],
"pepper_indexes": [0.01, 0.005],
"skewing_amplitudes" : [5, 8],
"flip_index" : [0, 1, -1],
"shuffle_indexes" : [ [0,2,1], [1,2,0], [1,0,2] , [2,1,0]],
"thetha" : [0.1, 0.2, -0.1, -0.2],
"thetha_padd": [-0.6, -1, -1.4, -1.8, 0.6, 1, 1.4, 1.8],
"white_padds" : [0.1, 0.3, 0.5, 0.7, 0.9],
"number_of_backgrounds_per_image": 2,
"continue_training": false,
"index_start" : 0,
"dir_of_start_model" : " ",
"weighted_loss": false,
"is_loss_soft_dice": false,
"data_is_provided": false,
"dir_train": "/home/vahid/extracted_lines/1919_bin/train",
"dir_eval": "/home/vahid/Documents/test/sbb_pixelwise_segmentation/test_label/pageextractor_test/eval_new",
"dir_output": "/home/vahid/extracted_lines/1919_bin/output",
"dir_rgb_backgrounds": "/home/vahid/Documents/1_2_test_eynollah/set_rgb_background",
"dir_rgb_foregrounds": "/home/vahid/Documents/1_2_test_eynollah/out_set_rgb_foreground",
"dir_img_bin": "/home/vahid/extracted_lines/1919_bin/images_bin"
}

View file

@ -6,6 +6,10 @@ imutils
scipy
tensorflow-addons # for connected_components, depublished and only compatible with tensorflow < 2.16
tensorflow < 2.16 # for tensorflow-addons, so only needed in training
tf-keras # avoid keras 3 (also needs TF_USE_LEGACY_KERAS=1)
tf-data < 2.16 # for tensorflow-addons, so only needed in training
tf-keras < 2.16 # avoid keras 3 (also needs TF_USE_LEGACY_KERAS=1)
protobuf < 5 # for tensorflow-addons, so only needed in training
torch
transformers <= 4.30.2 ; python_version < '3.10'
transformers >= 5 ; python_version >= '3.10'
eynollah-fork-tf2onnx == 1.17.0.post2
ml_dtypes >= 0.5