Merge pull request #138 from qurator-spk/extracting_images_only

Extracting images only
pull/142/merge
vahidrezanezhad 2 months ago committed by GitHub
commit bceeeb56c1
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194

@ -1,51 +0,0 @@
version: 2
jobs:
build-python37:
machine:
- image: ubuntu-2004:2023.02.1
steps:
- checkout
- restore_cache:
keys:
- model-cache
- run: make models
- save_cache:
key: model-cache
paths:
models_eynollah.tar.gz
models_eynollah
- run:
name: "Set Python Version"
command: pyenv install -s 3.7.16 && pyenv global 3.7.16
- run: make install
- run: make smoke-test
build-python38:
machine:
- image: ubuntu-2004:2023.02.1
steps:
- checkout
- restore_cache:
keys:
- model-cache
- run: make models
- save_cache:
key: model-cache
paths:
models_eynollah.tar.gz
models_eynollah
- run:
name: "Set Python Version"
command: pyenv install -s 3.8.16 && pyenv global 3.8.16
- run: make install
- run: make smoke-test
workflows:
version: 2
build:
jobs:
# - build-python37
- build-python38

@ -1,7 +1,7 @@
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions # This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Python package name: Test
on: [push] on: [push]
@ -14,8 +14,8 @@ jobs:
python-version: ['3.8', '3.9', '3.10', '3.11'] python-version: ['3.8', '3.9', '3.10', '3.11']
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v4
- uses: actions/cache@v2 - uses: actions/cache@v4
id: model_cache id: model_cache
with: with:
path: models_eynollah path: models_eynollah
@ -24,7 +24,7 @@ jobs:
if: steps.model_cache.outputs.cache-hit != 'true' if: steps.model_cache.outputs.cache-hit != 'true'
run: make models run: make models
- name: Set up Python ${{ matrix.python-version }} - name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2 uses: actions/setup-python@v5
with: with:
python-version: ${{ matrix.python-version }} python-version: ${{ matrix.python-version }}
- name: Install dependencies - name: Install dependencies

@ -5,6 +5,14 @@ Versioned according to [Semantic Versioning](http://semver.org/).
## Unreleased ## Unreleased
## [0.3.1] - 2024-08-27
Fixed:
* regression in OCR-D processor, #106
* Expected Ptrcv::UMat for argument 'contour', #110
* Memory usage explosion with very narrow images (e.g. book spine), #67
## [0.3.0] - 2023-05-13 ## [0.3.0] - 2023-05-13
Changed: Changed:
@ -117,6 +125,8 @@ Fixed:
Initial release Initial release
<!-- link-labels --> <!-- link-labels -->
[0.3.1]: ../../compare/v0.3.1...v0.3.0
[0.3.0]: ../../compare/v0.3.0...v0.2.0
[0.2.0]: ../../compare/v0.2.0...v0.1.0 [0.2.0]: ../../compare/v0.2.0...v0.1.0
[0.1.0]: ../../compare/v0.1.0...v0.0.11 [0.1.0]: ../../compare/v0.1.0...v0.0.11
[0.0.11]: ../../compare/v0.0.11...v0.0.10 [0.0.11]: ../../compare/v0.0.11...v0.0.10

@ -22,16 +22,14 @@ help:
models: models_eynollah models: models_eynollah
models_eynollah: models_eynollah.tar.gz models_eynollah: models_eynollah.tar.gz
# tar xf models_eynollah_renamed.tar.gz --transform 's/models_eynollah_renamed/models_eynollah/'
# tar xf models_eynollah_renamed.tar.gz
# tar xf 2022-04-05.SavedModel.tar.gz --transform 's/models_eynollah_renamed/models_eynollah/'
tar xf models_eynollah.tar.gz tar xf models_eynollah.tar.gz
models_eynollah.tar.gz: models_eynollah.tar.gz:
# wget 'https://qurator-data.de/eynollah/2021-04-25/models_eynollah.tar.gz' # wget 'https://qurator-data.de/eynollah/2021-04-25/models_eynollah.tar.gz'
# wget 'https://qurator-data.de/eynollah/2022-04-05/models_eynollah_renamed.tar.gz' # wget 'https://qurator-data.de/eynollah/2022-04-05/models_eynollah_renamed.tar.gz'
# wget 'https://ocr-d.kba.cloud/2022-04-05.SavedModel.tar.gz' # wget 'https://qurator-data.de/eynollah/2022-04-05/models_eynollah_renamed_savedmodel.tar.gz'
wget https://github.com/qurator-spk/eynollah/releases/download/v0.3.0/models_eynollah.tar.gz # wget 'https://github.com/qurator-spk/eynollah/releases/download/v0.3.0/models_eynollah.tar.gz'
wget 'https://github.com/qurator-spk/eynollah/releases/download/v0.3.1/models_eynollah.tar.gz'
# Install with pip # Install with pip
install: install:

@ -1,10 +1,10 @@
# Eynollah # Eynollah
> Document Layout Analysis (segmentation) using pre-trained models and heuristics > Document Layout Analysis with Deep Learning and Heuristics
[![PyPI Version](https://img.shields.io/pypi/v/eynollah)](https://pypi.org/project/eynollah/) [![PyPI Version](https://img.shields.io/pypi/v/eynollah)](https://pypi.org/project/eynollah/)
[![CircleCI Build Status](https://circleci.com/gh/qurator-spk/eynollah.svg?style=shield)](https://circleci.com/gh/qurator-spk/eynollah)
[![GH Actions Test](https://github.com/qurator-spk/eynollah/actions/workflows/test-eynollah.yml/badge.svg)](https://github.com/qurator-spk/eynollah/actions/workflows/test-eynollah.yml) [![GH Actions Test](https://github.com/qurator-spk/eynollah/actions/workflows/test-eynollah.yml/badge.svg)](https://github.com/qurator-spk/eynollah/actions/workflows/test-eynollah.yml)
[![License: ASL](https://img.shields.io/github/license/qurator-spk/eynollah)](https://opensource.org/license/apache-2-0/) [![License: ASL](https://img.shields.io/github/license/qurator-spk/eynollah)](https://opensource.org/license/apache-2-0/)
[![DOI](https://img.shields.io/badge/DOI-10.1145%2F3604951.3605513-red)](https://doi.org/10.1145/3604951.3605513)
![](https://user-images.githubusercontent.com/952378/102350683-8a74db80-3fa5-11eb-8c7e-f743f7d6eae2.jpg) ![](https://user-images.githubusercontent.com/952378/102350683-8a74db80-3fa5-11eb-8c7e-f743f7d6eae2.jpg)
@ -14,16 +14,18 @@
* Support for various image optimization operations: * Support for various image optimization operations:
* cropping (border detection), binarization, deskewing, dewarping, scaling, enhancing, resizing * cropping (border detection), binarization, deskewing, dewarping, scaling, enhancing, resizing
* Text line segmentation to bounding boxes or polygons (contours) including for curved lines and vertical text * Text line segmentation to bounding boxes or polygons (contours) including for curved lines and vertical text
* Detection of reading order * Detection of reading order (left-to-right or right-to-left)
* Output in [PAGE-XML](https://github.com/PRImA-Research-Lab/PAGE-XML) * Output in [PAGE-XML](https://github.com/PRImA-Research-Lab/PAGE-XML)
* [OCR-D](https://github.com/qurator-spk/eynollah#use-as-ocr-d-processor) interface * [OCR-D](https://github.com/qurator-spk/eynollah#use-as-ocr-d-processor) interface
:warning: Development is currently focused on achieving the best possible quality of results for a wide variety of historical documents and therefore processing can be very slow. We aim to improve this, but contributions are welcome.
## Installation ## Installation
Python versions `3.8-3.11` with Tensorflow versions >=`2.12` are currently supported. Python `3.8-3.11` with Tensorflow `2.12-2.15` on Linux are currently supported.
For (limited) GPU support the CUDA toolkit needs to be installed. For (limited) GPU support the CUDA toolkit needs to be installed.
You can either install via You can either install from PyPI
``` ```
pip install eynollah pip install eynollah
@ -39,45 +41,49 @@ cd eynollah; pip install -e .
Alternatively, you can run `make install` or `make install-dev` for editable installation. Alternatively, you can run `make install` or `make install-dev` for editable installation.
## Models ## Models
Pre-trained models can be downloaded from [qurator-data.de](https://qurator-data.de/eynollah/). Pre-trained models can be downloaded from [qurator-data.de](https://qurator-data.de/eynollah/) or [huggingface](https://huggingface.co/SBB?search_models=eynollah).
In case you want to train your own model to use with Eynollah, have a look at [sbb_pixelwise_segmentation](https://github.com/qurator-spk/sbb_pixelwise_segmentation). ## Train
🚧 **Work in progress**
In case you want to train your own model, have a look at [`sbb_pixelwise_segmentation`](https://github.com/qurator-spk/sbb_pixelwise_segmentation).
## Usage ## Usage
The command-line interface can be called like this: The command-line interface can be called like this:
```sh ```sh
eynollah \ eynollah \
-i <image file> \ -i <single image file> | -di <directory containing image files> \
-o <output directory> \ -o <output directory> \
-m <path to directory containing model files> \ -m <directory containing model files> \
[OPTIONS] [OPTIONS]
``` ```
The following options can be used to further configure the processing: The following options can be used to further configure the processing:
| option | description | | option | description |
|----------|:-------------| |-------------------|:-------------------------------------------------------------------------------|
| `-fl` | full layout analysis including all steps and segmentation classes | | `-fl` | full layout analysis including all steps and segmentation classes |
| `-light` | lighter and faster but simpler method for main region detection and deskewing | | `-light` | lighter and faster but simpler method for main region detection and deskewing |
| `-tab` | apply table detection | | `-tab` | apply table detection |
| `-ae` | apply enhancement (the resulting image is saved to the output directory) | | `-ae` | apply enhancement (the resulting image is saved to the output directory) |
| `-as` | apply scaling | | `-as` | apply scaling |
| `-cl` | apply contour detection for curved text lines instead of bounding boxes | | `-cl` | apply contour detection for curved text lines instead of bounding boxes |
| `-ib` | apply binarization (the resulting image is saved to the output directory) | | `-ib` | apply binarization (the resulting image is saved to the output directory) |
| `-ep` | enable plotting (MUST always be used with `-sl`, `-sd`, `-sa`, `-si` or `-ae`) | | `-ep` | enable plotting (MUST always be used with `-sl`, `-sd`, `-sa`, `-si` or `-ae`) |
| `-ho` | ignore headers for reading order dectection | | `-eoi` | extract only images to output directory (other processing will not be done) |
| `-di <directory>` | process all images in a directory in batch mode | | `-ho` | ignore headers for reading order dectection |
| `-si <directory>` | save image regions detected to this directory | | `-si <directory>` | save image regions detected to this directory |
| `-sd <directory>` | save deskewed image to this directory | | `-sd <directory>` | save deskewed image to this directory |
| `-sl <directory>` | save layout prediction as plot to this directory | | `-sl <directory>` | save layout prediction as plot to this directory |
| `-sp <directory>` | save cropped page image to this directory | | `-sp <directory>` | save cropped page image to this directory |
| `-sa <directory>` | save all (plot, enhanced/binary image, layout) to this directory | | `-sa <directory>` | save all (plot, enhanced/binary image, layout) to this directory |
If no option is set, the tool will perform layout detection of main regions (background, text, images, separators and marginals). If no option is set, the tool performs layout detection of main regions (background, text, images, separators and marginals).
The tool produces better quality output when RGB images are used as input than greyscale or binarized images. The best output quality is produced when RGB images are used as input rather than greyscale or binarized images.
#### Use as OCR-D processor #### Use as OCR-D processor
🚧 **Work in progress**
Eynollah ships with a CLI interface to be used as [OCR-D](https://ocr-d.de) processor. Eynollah ships with a CLI interface to be used as [OCR-D](https://ocr-d.de) processor.
@ -95,11 +101,14 @@ ocrd-eynollah-segment -I OCR-D-IMG-BIN -O SEG-LINE -P models
uses the original (RGB) image despite any binarization that may have occured in previous OCR-D processing steps uses the original (RGB) image despite any binarization that may have occured in previous OCR-D processing steps
#### Additional documentation
Please check the [wiki](https://github.com/qurator-spk/eynollah/wiki).
## How to cite ## How to cite
If you find this tool useful in your work, please consider citing our paper: If you find this tool useful in your work, please consider citing our paper:
```bibtex ```bibtex
@inproceedings{rezanezhad2023eynollah, @inproceedings{hip23rezanezhad,
title = {Document Layout Analysis with Deep Learning and Heuristics}, title = {Document Layout Analysis with Deep Learning and Heuristics},
author = {Rezanezhad, Vahid and Baierer, Konstantin and Gerber, Mike and Labusch, Kai and Neudecker, Clemens}, author = {Rezanezhad, Vahid and Baierer, Konstantin and Gerber, Mike and Labusch, Kai and Neudecker, Clemens},
booktitle = {Proceedings of the 7th International Workshop on Historical Document Imaging and Processing {HIP} 2023, booktitle = {Proceedings of the 7th International Workshop on Historical Document Imaging and Processing {HIP} 2023,

@ -1 +1 @@
qurator/eynollah/ocrd-tool.json src/eynollah/ocrd-tool.json

@ -1,34 +1,43 @@
[build-system] [build-system]
requires = ["setuptools>=61.0"] requires = ["setuptools>=61.0", "wheel", "setuptools-ocrd"]
build-backend = "setuptools.build_meta"
[project] [project]
name = "eynollah" name = "eynollah"
version = "0.1.0" authors = [
{name = "Vahid Rezanezhad"},
{name = "Staatsbibliothek zu Berlin - Preußischer Kulturbesitz"},
]
description = "Document Layout Analysis"
dependencies = [ readme = "README.md"
"ocrd >= 2.23.3", license.file = "LICENSE"
"tensorflow == 2.12.1", requires-python = ">=3.8"
"scikit-learn >= 0.23.2", keywords = ["document layout analysis", "image segmentation"]
"imutils >= 0.5.3",
"numpy < 1.24.0", dynamic = ["dependencies", "version"]
"matplotlib",
"torch == 2.0.1", classifiers = [
"transformers == 4.30.2", "Development Status :: 4 - Beta",
"numba == 0.58.1", "Environment :: Console",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Topic :: Scientific/Engineering :: Image Processing",
] ]
[project.scripts] [project.scripts]
eynollah = "qurator.eynollah.cli:main" eynollah = "eynollah.cli:main"
ocrd-eynollah-segment="qurator.eynollah.ocrd_cli:main" ocrd-eynollah-segment = "eynollah.ocrd_cli:main"
[project.urls]
Homepage = "https://github.com/qurator-spk/eynollah"
Repository = "https://github.com/qurator-spk/eynollah.git"
[tool.setuptools.dynamic]
dependencies = {file = ["requirements.txt"]}
[tool.setuptools.packages.find] [tool.setuptools.packages.find]
where = ["."] where = ["src"]
include = ["qurator"]
[tool.setuptools.package-data] [tool.setuptools.package-data]
"*" = ["*.json", '*.yml', '*.xml', '*.xsd'] "*" = ["*.json", '*.yml', '*.xml', '*.xsd']

@ -1 +0,0 @@
__import__("pkg_resources").declare_namespace(__name__)

@ -1,8 +1,9 @@
import sys import sys
import click import click
from ocrd_utils import initLogging, setOverrideLogLevel from ocrd_utils import initLogging, setOverrideLogLevel
from qurator.eynollah.eynollah import Eynollah from eynollah.eynollah import Eynollah
from qurator.eynollah.sbb_binarize import SbbBinarizer from eynollah.eynollah import Eynollah
from eynollah.sbb_binarize import SbbBinarizer
@click.group() @click.group()
def main(): def main():
@ -146,6 +147,12 @@ def binarization(patches, model_dir, input_image, output_image, dir_in, dir_out)
is_flag=True, is_flag=True,
help="If set, will plot intermediary files and images", help="If set, will plot intermediary files and images",
) )
@click.option(
"--extract_only_images/--disable-extracting_only_images",
"-eoi/-noeoi",
is_flag=True,
help="If a directory is given, only images in documents will be cropped and saved there and the other processing will not be done",
)
@click.option( @click.option(
"--allow-enhancement/--no-allow-enhancement", "--allow-enhancement/--no-allow-enhancement",
"-ae/-noae", "-ae/-noae",
@ -247,7 +254,7 @@ def binarization(patches, model_dir, input_image, output_image, dir_in, dir_out)
help="Override log level globally to this", help="Override log level globally to this",
) )
def layout(image, out, dir_in, model, save_images, save_layout, save_deskewed, save_all, save_page, enable_plotting, allow_enhancement, curved_line, textline_light, full_layout, tables, right2left, input_binary, allow_scaling, headers_off, light_version, reading_order_machine_based, do_ocr, num_col_upper, num_col_lower, skip_layout_and_reading_order, ignore_page_extraction, log_level): def layout(image, out, dir_in, model, save_images, save_layout, save_deskewed, save_all, extract_only_images, save_page, enable_plotting, allow_enhancement, curved_line, textline_light, full_layout, tables, right2left, input_binary, allow_scaling, headers_off, light_version, reading_order_machine_based, do_ocr, num_col_upper, num_col_lower, skip_layout_and_reading_order, ignore_page_extraction, log_level):
if log_level: if log_level:
setOverrideLogLevel(log_level) setOverrideLogLevel(log_level)
initLogging() initLogging()
@ -260,6 +267,9 @@ def layout(image, out, dir_in, model, save_images, save_layout, save_deskewed, s
if textline_light and not light_version: if textline_light and not light_version:
print('Error: You used -tll to enable light textline detection but -light is not enabled') print('Error: You used -tll to enable light textline detection but -light is not enabled')
sys.exit(1) sys.exit(1)
if extract_only_images and (allow_enhancement or allow_scaling or light_version or curved_line or textline_light or full_layout or tables or right2left or headers_off) :
print('Error: You used -eoi which can not be enabled alongside light_version -light or allow_scaling -as or allow_enhancement -ae or curved_line -cl or textline_light -tll or full_layout -fl or tables -tab or right2left -r2l or headers_off -ho')
if light_version and not textline_light: if light_version and not textline_light:
print('Error: You used -light without -tll. Light version need light textline to be enabled.') print('Error: You used -light without -tll. Light version need light textline to be enabled.')
sys.exit(1) sys.exit(1)
@ -269,6 +279,7 @@ def layout(image, out, dir_in, model, save_images, save_layout, save_deskewed, s
dir_in=dir_in, dir_in=dir_in,
dir_models=model, dir_models=model,
dir_of_cropped_images=save_images, dir_of_cropped_images=save_images,
extract_only_images=extract_only_images,
dir_of_layout=save_layout, dir_of_layout=save_layout,
dir_of_deskewed=save_deskewed, dir_of_deskewed=save_deskewed,
dir_of_all=save_all, dir_of_all=save_all,

File diff suppressed because it is too large Load Diff

@ -1,5 +1,5 @@
{ {
"version": "0.3.0", "version": "0.3.1",
"git_url": "https://github.com/qurator-spk/eynollah", "git_url": "https://github.com/qurator-spk/eynollah",
"tools": { "tools": {
"ocrd-eynollah-segment": { "ocrd-eynollah-segment": {
@ -52,10 +52,10 @@
}, },
"resources": [ "resources": [
{ {
"description": "models for eynollah (TensorFlow format)", "description": "models for eynollah (TensorFlow SavedModel format)",
"url": "https://github.com/qurator-spk/eynollah/releases/download/v0.3.0/models_eynollah.tar.gz", "url": "https://github.com/qurator-spk/eynollah/releases/download/v0.3.1/models_eynollah.tar.gz",
"name": "default", "name": "default",
"size": 1761991295, "size": 1894627041,
"type": "archive", "type": "archive",
"path_in_archive": "models_eynollah" "path_in_archive": "models_eynollah"
} }

@ -42,7 +42,7 @@ class EynollahProcessor(Processor):
page = pcgts.get_Page() page = pcgts.get_Page()
# XXX loses DPI information # XXX loses DPI information
# page_image, _, _ = self.workspace.image_from_page(page, page_id, feature_filter='binarized') # page_image, _, _ = self.workspace.image_from_page(page, page_id, feature_filter='binarized')
image_filename = self.workspace.download_file(next(self.workspace.mets.find_files(url=page.imageFilename))).local_filename image_filename = self.workspace.download_file(next(self.workspace.mets.find_files(local_filename=page.imageFilename))).local_filename
eynollah_kwargs = { eynollah_kwargs = {
'dir_models': self.resolve_resource(self.parameter['models']), 'dir_models': self.resolve_resource(self.parameter['models']),
'allow_enhancement': False, 'allow_enhancement': False,

@ -202,10 +202,18 @@ class EynollahXmlWriter():
page.add_ImageRegion(img_region) page.add_ImageRegion(img_region)
points_co = '' points_co = ''
for lmm in range(len(found_polygons_text_region_img[mm])): for lmm in range(len(found_polygons_text_region_img[mm])):
points_co += str(int((found_polygons_text_region_img[mm][lmm,0,0] + page_coord[2]) / self.scale_x)) try:
points_co += ',' points_co += str(int((found_polygons_text_region_img[mm][lmm,0,0] + page_coord[2]) / self.scale_x))
points_co += str(int((found_polygons_text_region_img[mm][lmm,0,1] + page_coord[0]) / self.scale_y)) points_co += ','
points_co += ' ' points_co += str(int((found_polygons_text_region_img[mm][lmm,0,1] + page_coord[0]) / self.scale_y))
points_co += ' '
except:
points_co += str(int((found_polygons_text_region_img[mm][lmm][0] + page_coord[2])/ self.scale_x ))
points_co += ','
points_co += str(int((found_polygons_text_region_img[mm][lmm][1] + page_coord[0])/ self.scale_y ))
points_co += ' '
img_region.get_Coords().set_points(points_co[:-1]) img_region.get_Coords().set_points(points_co[:-1])
for mm in range(len(polygons_lines_to_be_written_in_xml)): for mm in range(len(polygons_lines_to_be_written_in_xml)):

@ -1,5 +1,5 @@
from tests.base import main from tests.base import main
from qurator.eynollah.utils.counter import EynollahIdCounter from eynollah.utils.counter import EynollahIdCounter
def test_counter_string(): def test_counter_string():
c = EynollahIdCounter() c = EynollahIdCounter()

@ -1,6 +1,6 @@
import cv2 import cv2
from pathlib import Path from pathlib import Path
from qurator.eynollah.utils.pil_cv2 import check_dpi from eynollah.utils.pil_cv2 import check_dpi
from tests.base import main from tests.base import main
def test_dpi(): def test_dpi():

@ -2,7 +2,7 @@ from os import environ
from pathlib import Path from pathlib import Path
from ocrd_utils import pushd_popd from ocrd_utils import pushd_popd
from tests.base import CapturingTestCase as TestCase, main from tests.base import CapturingTestCase as TestCase, main
from qurator.eynollah.cli import main as eynollah_cli from eynollah.cli import main as eynollah_cli
testdir = Path(__file__).parent.resolve() testdir = Path(__file__).parent.resolve()

@ -1,7 +1,7 @@
def test_utils_import(): def test_utils_import():
import qurator.eynollah.utils import eynollah.utils
import qurator.eynollah.utils.contour import eynollah.utils.contour
import qurator.eynollah.utils.drop_capitals import eynollah.utils.drop_capitals
import qurator.eynollah.utils.drop_capitals import eynollah.utils.drop_capitals
import qurator.eynollah.utils.is_nan import eynollah.utils.is_nan
import qurator.eynollah.utils.rotate import eynollah.utils.rotate

@ -1,5 +1,5 @@
from pytest import main from pytest import main
from qurator.eynollah.utils.xml import create_page_xml from eynollah.utils.xml import create_page_xml
from ocrd_models.ocrd_page import to_xml from ocrd_models.ocrd_page import to_xml
PAGE_2019 = 'http://schema.primaresearch.org/PAGE/gts/pagecontent/2019-07-15' PAGE_2019 = 'http://schema.primaresearch.org/PAGE/gts/pagecontent/2019-07-15'

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