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#!/bin/sh
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# Run the my_ocrd_workflow container on the current workspace
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set -e # Abort on error
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DOCKER_IMAGE=${DOCKER_IMAGE:-my_ocrd_workflow:latest} # default to locally built
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if echo "$DOCKER_IMAGE" | grep -q "/"; then
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docker pull "$DOCKER_IMAGE"
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fi
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# XXX Work around podman vs docker uid behaviour
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if docker -v 2>&1 | grep -q podman; then
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user="0:0"
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else
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user="`id -u`:`id -g`"
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fi
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# The container currently needs to run privileged to allow it to read from e.g.
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# /home on SELinux secured systems such as Fedora. We might want to use udica
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# instead in the future.
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docker run --privileged=true --rm -t \
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\
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--user $user \
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--mount type=bind,src="$(pwd)",target=/data \
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\
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-e LOG_LEVEL=$LOG_LEVEL \
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$DOCKER_IMAGE "$@"
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