Optionally output to an Excel .xlsx file

master
Gerber, Mike 3 years ago
parent 0a9a66c2cc
commit f9e418c460

@ -451,7 +451,8 @@ def flatten(d: MutableMapping, parent='', separator='_'):
@click.option('--output', '-o', 'output_file', type=click.Path(), help='Output pickle file',
default='mods_info_df.pkl', show_default=True)
@click.option('--output-csv', type=click.Path(), help='Output CSV file')
def process(mets_files: List[str], output_file: str, output_csv: str):
@click.option('--output-xlsx', type=click.Path(), help='Output Excel .xlsx file')
def process(mets_files: List[str], output_file: str, output_csv: str, output_xlsx: str):
"""
A tool to convert the MODS metadata in INPUT to a pandas DataFrame.
@ -521,6 +522,9 @@ def process(mets_files: List[str], output_file: str, output_csv: str):
if output_csv:
logging.info('Writing CSV to {}'.format(output_csv))
mods_info_df.to_csv(output_csv)
if output_xlsx:
logging.info('Writing Excel .xlsx to {}'.format(output_xlsx))
mods_info_df.to_excel(output_xlsx)
def main():

@ -2,3 +2,4 @@ click
pandas
tqdm
lxml
openpyxl

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